Pairwise Alignments

Query, 478 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

Subject, 538 a.a., Type I secretion outer membrane protein, TolC (NCBI) from Rhodospirillum rubrum S1H

 Score = 79.7 bits (195), Expect = 2e-19
 Identities = 93/400 (23%), Positives = 170/400 (42%), Gaps = 19/400 (4%)

Query: 72  DAVLQAAQWHPSIAEAIGNLYKQGEGINVARAGYYPQISGGIRT-----GYDTGYGG-DR 125
           +A++ A Q +P++      L    E +  A + + PQ+S    T      Y+ G    D 
Sbjct: 82  EALVSAYQANPTLQARRALLRAVDEQVPQALSDWRPQVSVQGSTFYQQMDYEPGRKNLDN 141

Query: 126 NSQALNLSLKQMLYDFGKVDSAVNAAQAAAARAQANILLVVDDLARDTAYAWIETRRYEQ 185
               L + L+Q ++   +  +  + A+A     +A +  V   +  + A A+    R + 
Sbjct: 142 RPATLGVVLQQNIFRGLRTVAQTDQAKAQVQSERALLRSVEQTVLLNAAQAYFNVIRDQA 201

Query: 186 LMTIARDQIRGVGDIAGMARQRSDMGASTRSDVVQAESRVESARATLEEYQSQYERWRST 245
           ++ +  +  + +      A  R  +G  TR+DV QA+SR+  A A   + +   E  R+ 
Sbjct: 202 VLELNINNEQVLRRQLDAANDRFRVGEITRTDVAQADSRLAGAIADRIQAEGTLESSRAN 261

Query: 246 LAALMGR----VTPPALAEGSPAELDQACKRPAQGDDRLPAVLMALAQRAQGQAELAQAK 301
              ++G     + PP      P  L+         +   P V+ AL    Q QA +   +
Sbjct: 262 YTQVVGHPPENIQPPPPYARLPQTLEDGLNTALSAN---PDVIAALYVWRQAQAAIRDQR 318

Query: 302 AEAYPTLSLQPQVNHYLDDDYNRDNARLDRT-QAGIYLNVEVPIYQGGSISARTRAAGHA 360
            +  PTL+ +  V++    + +       +T QAG  LN+ VP+YQGG++ ++ R A H 
Sbjct: 319 GKLLPTLNAE--VSYSFSHNPSATTEYDTKTFQAG--LNLTVPLYQGGAVYSQIRDAKHR 374

Query: 361 LTAADSAEDAARLQARRGLAEAKAQTSGLGRRLTSLEARQVSIQEARMLYGRQYLDLGTR 420
                   D  R      L  A    +    R++S ++ Q+      +   ++   +G+R
Sbjct: 375 AGQRRLQVDEQREAVIESLTSAWETLTSARARVSSYKS-QIEAAGIALDGVQREAQVGSR 433

Query: 421 PLLDLLNAEQEIYQSRFELAGTRSDLLRLDVDCLYNTGAL 460
            +LD+L+AEQE+  SR  L     D      + L   GA+
Sbjct: 434 TVLDVLDAEQELLTSRVNLVRAERDSAISTYEVLAALGAM 473



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 50/226 (22%), Positives = 84/226 (37%), Gaps = 20/226 (8%)

Query: 51  VPARPPIGMAPVASGERL--SLTDAVLQAAQWHPSIAEAIGNLYKQGEGINVARAGYYPQ 108
           V   PP  + P     RL  +L D +  A   +P +  A+    +    I   R    P 
Sbjct: 265 VVGHPPENIQPPPPYARLPQTLEDGLNTALSANPDVIAALYVWRQAQAAIRDQRGKLLPT 324

Query: 109 ISGGIRTGYD------TGYGGDRNSQALNLSLKQMLYDFGKVDSAVNAAQAAAARAQANI 162
           ++  +   +       T Y        LNL++   LY  G V S +  A+  A + +  +
Sbjct: 325 LNAEVSYSFSHNPSATTEYDTKTFQAGLNLTVP--LYQGGAVYSQIRDAKHRAGQRRLQV 382

Query: 163 LLVVDDLARDTAYAWIETRRYEQLMTIARDQIRGVGDIAGMARQRSDMGASTRSDVVQAE 222
               + +      AW         ++  + QI   G      ++ + +G+ T  DV+ AE
Sbjct: 383 DEQREAVIESLTSAWETLTSARARVSSYKSQIEAAGIALDGVQREAQVGSRTVLDVLDAE 442

Query: 223 -----SRVESARATLEEYQSQYERWRSTLAALMGRVTPPALAEGSP 263
                SRV   RA  +   S YE     + A +G +T   L   +P
Sbjct: 443 QELLTSRVNLVRAERDSAISTYE-----VLAALGAMTAEDLGLNTP 483