Pairwise Alignments

Query, 722 a.a., Protein secretion ABC efflux system, permease and ATP-binding protein from Pseudomonas putida KT2440

Subject, 1000 a.a., cyclic nucleotide-binding domain (cNMP-BD) protein from Synechococcus elongatus PCC 7942

 Score =  266 bits (680), Expect = 4e-75
 Identities = 175/565 (30%), Positives = 297/565 (52%), Gaps = 17/565 (3%)

Query: 164 WFARIVLRDLRPYGQVMIASLVANVLALAGVLFSMQVYDRVIPAESLPTLYVLFGGVVLA 223
           WF   + R      +V+IASLV  +  LA  L   QV D+VI   SL  L      +V+ 
Sbjct: 431 WFWPSIQRYRVRLIEVLIASLVVQLFTLANPLIIQQVIDKVIGQGSLNNLNSFAVLLVIL 490

Query: 224 LVFDFSMRLLRLKVTDLLGKRADLRVSDLVYGHALRLR-NSVRPKSTGSFISQLRELESI 282
            VF   +  LR  +      R DL++   +    L+L       +  G   S+++ELE I
Sbjct: 491 GVFQGLLSSLRTYLFADTTNRIDLKLGSDIIDRLLKLPLRYFERRPVGELSSRVQELEKI 550

Query: 283 RDLITSSTATVLADLPFFLLFLFVFWLIGGVLVFIPLVALLAMVLPGLLAQRRLARLANA 342
           R  +T +  T + D  F ++++ V  +    L  + L  +   V     A   + R    
Sbjct: 551 RSFLTGTALTTVMDAMFSVIYILVMLVYSWFLTLVALSTVPIFVAITFFASPVVRR---- 606

Query: 343 SMRESALRNA----MLVESIQGLDEIKALQAEARFERQWNQYNA---ACAHTNLRLRTLT 395
            +RE A RNA     LVE + G+  +KA   E +   QW +  A   A    N+   T  
Sbjct: 607 QLREKAERNAETQSQLVEVLSGIQTVKAQNIELKARWQWQERYARYIAAGFRNINTSTAA 666

Query: 396 NGLVTWTQNVQGAVFAVVIVIGAPMVIAGDLTTGSLVAASMLSSRMMAPLAQLTHVLTRW 455
           + L  +   + G +   V+ +G  +V    L+ G L+A  ++S  +  PL +L  +   +
Sbjct: 667 SSLTNFFNQLSGLL---VLWVGVYLVFDNQLSLGQLIAFRIISGYVTQPLLRLAQLWQNF 723

Query: 456 QQAKVALQGLDKLMQSPVDHPEGE-ARVHLPAIHGEYRLRQANFRYSEDYPPVLNIGRLD 514
           Q+  ++L+ L  ++ +P +  + +  ++ +P I+G+   R  +FR+ E  P  L+   L+
Sbjct: 724 QETALSLERLADIVDTPQESDDDDQGKIPMPMINGKVEFRNLSFRFGEQGPLQLSNVTLE 783

Query: 515 IQPGERIAVLGRNGAGKSTLLQALGGAMDLVQGEISLDGIAMAHLDPADLRRDVGLLPQY 574
           I  GE + ++G++G+GKSTL++ L      ++GEI +DG  ++ ++   LRR +G++PQ 
Sbjct: 784 IPAGEYVGIVGQSGSGKSTLMKLLPRLYSPLEGEILIDGYDISKVELYSLRRQIGIVPQD 843

Query: 575 ARLFHGTLRENLTLGAGQASDQELVAALAATGALDFVRRLPKGMDHLILEGGLGLSGGQR 634
           + LF GT+ EN++L    A+  E++ A  A GA DF+  LP G +  + E G  LSGGQR
Sbjct: 844 SLLFQGTVEENISLTKPNATTDEIITAAKAAGAHDFIMTLPLGYNTRVGERGGALSGGQR 903

Query: 635 QALVLSRLLVRQPQVLLLDEPTASLDDMTERKLLDNLERFCQGRTLVIATHRLSVLQRVD 694
           Q + ++R +++ PQ+L+LDE T++LD  TER++  NL++  +G+T+   THRLS ++  D
Sbjct: 904 QRIAIARTVLQNPQLLILDEATSALDYDTERQVSINLQQHFRGKTVFFITHRLSTVRHAD 963

Query: 695 RILVLDAGRIVIDDARDAALAKLQG 719
           RI+V+D G +V   + D  L +L+G
Sbjct: 964 RIIVMDKGAMVEQGSHD-ELMELRG 987