Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 438 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  128 bits (322), Expect = 3e-34
 Identities = 105/420 (25%), Positives = 188/420 (44%), Gaps = 54/420 (12%)

Query: 16  DQAVFRAGRIITLCALMLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGIVAQM 75
           D  + R G  + +  ++   F  WAA   +   +   G V   +  + +Q  EGGIV  +
Sbjct: 17  DHKIRRLG--VVIIGVIFGVFGTWAAIAPLDGAAYAPGVVTVQAYRKTVQHLEGGIVKAL 74

Query: 76  SVAEGDLVERGQVLAQLDPTKTASSVGESEAKYRAARASQARLQAEVTGKP------LTF 129
              +GD+V+R   L  LD  +       +  +  AARA +ARL AE    P      +  
Sbjct: 75  LAHDGDIVKRDDPLIILDDAQLRFEYEMARGQLIAARAMEARLIAERDSLPMISFGDIAD 134

Query: 130 PESLRDSPDLIDAETALYQTRRRGLEQTLAGIQDSLQLVRSELKITENLA---------- 179
           P+S+R   +    ET ++  R+      +A +++ +   R ++K  E++           
Sbjct: 135 PDSVR-GMEARQGETRVFSARQGSRLGQIAVLRERVGQFRQQIKGLESMVGSKVHLEKSY 193

Query: 180 --------------------------KMG------ASSRVEVIRLNRQRSELELKANEAR 207
                                     K+G      A  R  + R   Q +E +L+  +  
Sbjct: 194 SGEIDELADLLKQGFVDKQRLLEQERKLGLLRSEVADHRSTIDRTRLQINETQLQILQVD 253

Query: 208 SDYLVRAREELAKASAEADALSEVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGGVVQPG 267
            D+     ++LA+       L E      D L+R+ +R+P  G+V D+ V+T+GG+V+P 
Sbjct: 254 KDFNADVVKQLAEVQTRIYDLKEKTSALEDRLSRIVIRAPEAGMVIDMSVHTIGGIVRPA 313

Query: 268 GQVMKIVPMDERLLIETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGISPDTL 327
             ++ IVP    L+IE ++AP DI  I   + A ++  A++ +    ++G+V  +S D +
Sbjct: 314 TPLLDIVPSVSDLVIEAQVAPVDIDRIAIGKRADIRFGAFNSATTPVIEGEVSSVSADRM 373

Query: 328 QDEVKPEIYYYRVFIRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIKPLNRA 387
            +E K    YY   +R  +   +    ++  ++PGM A V I TG++T+L YL++P   A
Sbjct: 374 TNE-KTGTAYYLARVRVTEAGARTLGERK--LLPGMPADVLIITGQRTLLQYLMQPARNA 430