Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 460 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  245 bits (625), Expect = 2e-69
 Identities = 155/433 (35%), Positives = 234/433 (54%), Gaps = 66/433 (15%)

Query: 26  ITLCAL--MLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGIVAQMSVAEGDLV 83
           +T+ AL  ++ AFL WA + E+ +V+ GTGKVIPSS+ QVIQS +GG++ ++ V EG++V
Sbjct: 30  LTIWALTSLIFAFLIWAYFAELDQVTVGTGKVIPSSQIQVIQSLDGGVLQELFVREGNIV 89

Query: 84  ERGQVLAQLDPTKTASSVGESEAKYRAARASQARLQAEVTG------------------K 125
            +G+ LA++D T+  S   + E +  + +A+  R++ E+                    +
Sbjct: 90  AKGEPLARIDDTRFRSDFAQQEEEVFSLQANVIRMRTELNSITVSDMASDWREQVRIVKQ 149

Query: 126 PLTFPESLR-DSPDLIDAETALYQTRRRGLEQTL---------------------AGIQD 163
            L FP++L     +L+  + A Y  R   LE  L                     A +  
Sbjct: 150 ELIFPDALSAQKAELVARQQAEYNGRLDNLENQLEILARQIQQRQQENEELTTKIATMTT 209

Query: 164 SLQLVRSELKITENLAKMGASSRVEVIRLNRQRSELE---------------------LK 202
           S QL+  EL++T  LA+ G    VE+++L R  +EL+                     LK
Sbjct: 210 SFQLISRELELTRPLAQKGIVPEVELLKLERTVNELQGELKAMRQLRPKIKATLDEAILK 269

Query: 203 ANEARSDYLVRAREELAKASAEADALSEVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGG 262
             EA   +    R +L         +SE   G  D +++  + SPV G VK + +NTLGG
Sbjct: 270 RREAVFVFAADTRAQLNDMQTRLSRMSEAQVGAQDKVSKAVITSPVNGTVKTVHINTLGG 329

Query: 263 VVQPGGQVMKIVPMDERLLIETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGI 322
           VVQPG  +M+IVP +++LLIE +I P+DIAF+H    A VK++AYD++ YGGL G V  I
Sbjct: 330 VVQPGVDIMEIVPSEDQLLIEAKITPKDIAFLHVGLPAVVKVTAYDFTRYGGLQGTVEHI 389

Query: 323 SPDTLQDEVKPEIYYYRVFIRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIK 382
           S DT QDE     Y  RV  RT + SL    G    I+PGM+ +VD+ TG+++IL+Y++ 
Sbjct: 390 SADTTQDEEGNSFYLIRV--RTAESSLVKDDGTEMPIIPGMLTSVDVITGQRSILEYILN 447

Query: 383 PLNRAKE-ALRER 394
           P+ RAK+ ALRER
Sbjct: 448 PILRAKDTALRER 460