Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  154 bits (388), Expect = 7e-42
 Identities = 123/449 (27%), Positives = 206/449 (45%), Gaps = 71/449 (15%)

Query: 1   MSNHELPASYLDGQ--------DDQAVFRAGRIITLCALMLAAFLAWAAWFEVTEVSTGT 52
           M     PA + +G         D +   RAG +I L A        WAA   ++      
Sbjct: 45  MPGDTTPARWTEGMLSIPKVVTDSRQTIRAGWLIILVAF--GGLGLWAATAPLSSAVGAP 102

Query: 53  GKVIPSSREQVIQSFEGGIVAQMSVAEGDLVERGQVLAQLDPTKTASSVGESEAKYRAAR 112
           G ++  S  + +Q  EGGI+ ++ V EGD V +G  L +L+ T+  +S      ++   +
Sbjct: 103 GTIVVESNRKTVQHLEGGIIKEILVKEGDRVHQGDPLIRLETTQALASAAVVSNQFETYQ 162

Query: 113 ASQARLQAEVTG-KPLTFPESL-------RDSPDLIDAETALYQTRRRGLEQTLAGIQDS 164
           A +ARL AE    K +TFP  L        ++ +++ A+   +  R + +E  +A +Q  
Sbjct: 163 ALEARLVAERDEQKTITFPPDLIAVAKLKPETAEILQAQQQQFDERHKSIEGQVAILQKR 222

Query: 165 LQLVRSELK----------------------ITENLAKMGASSRVEVIRLNRQRSELELK 202
           +   R E++                      + E LAK G + R  ++ + R+ + LE  
Sbjct: 223 IAQSRQEIEGLKVQRQSKKRQLEIFQDEIVGLRELLAK-GYTPRTRILAMEREMTRLE-- 279

Query: 203 ANEARSDYLVRAREELAKASAEADALS------EVIRGR------------------SDS 238
             E  +D    AR E A   AE   +       E + G+                  +D 
Sbjct: 280 -GEVGTDTSSMARAEQAVGEAELQIIQTRQQFREDVVGQLREVQTKLSELRERGTVATDV 338

Query: 239 LTRLTLRSPVRGIVKDIEVNTLGGVVQPGGQVMKIVPMDERLLIETRIAPRDIAFIHPDQ 298
           L+R  L +   G+++++ V+TLGG+++PG  +M+IVP D+RL+IE +I+PRDI  + P  
Sbjct: 339 LSRTVLLASQAGVIQNLAVHTLGGIIKPGETLMEIVPEDDRLVIEAQISPRDIDNVVPGM 398

Query: 299 AAKVKISAYDYSVYGGLDGKVVGISPDTLQDEVKPEIYYYRVFIRTEQDSLQNKAGKRFA 358
             +V+ SA++      +DG +  +S D   +E +    YY+  I    + L    G   A
Sbjct: 399 DTEVRFSAFNSRTIPIIDGVLSQVSADRFVNE-RDSSSYYKARIEVSDEELAKLGG--LA 455

Query: 359 IVPGMIATVDIRTGEKTILDYLIKPLNRA 387
           +  GM   V I+TGE+T+L Y +KPL  A
Sbjct: 456 LRAGMPVDVMIKTGERTVLHYFLKPLEDA 484