Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 441 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  169 bits (428), Expect = 1e-46
 Identities = 123/414 (29%), Positives = 195/414 (47%), Gaps = 46/414 (11%)

Query: 24  RIITLCALMLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGIVAQMSVAEGDLV 83
           RI    A  +   L W+ +  + E++   G+V+P    QVIQS  GG +A ++VAEGDLV
Sbjct: 31  RITFFIATAVFILLIWSIFTNIEEIAKAKGQVVPLGHRQVIQSQTGGTLASIAVAEGDLV 90

Query: 84  ERGQVLAQLDPTKTASSVGESEAKYRAARASQARLQAEVTGKPLTFPESLRDSPDLI--- 140
           ++G ++A    T + +   E ++K         R  A +  +   F       P L+   
Sbjct: 91  QKGDLIANFVATDSQALKEELQSKQANLELKIERYTAFLEEREPDFNAYQLGFPALVAQH 150

Query: 141 ------------------DAETALYQTRRRGLEQTLAGIQDSLQLVRSELKITENLAKMG 182
                             +++ A  +     +EQ +  ++D ++ V   LK+  ++ +  
Sbjct: 151 INALARMNQEKQAIIALSESDVAKSEAELASVEQEITPLKDQIRSVEQTLKMMNSVKEQQ 210

Query: 183 ASSRVEVIRLNRQRSEL--ELKANEARSDYLVRA--REELAKASAEADALSEVIRGRSDS 238
           A S++ ++   ++      ELK  E R   L R    +E   A  +A   +EV   R+D+
Sbjct: 211 AVSKLRMLESQQKLDAYIRELKVLEGRRSVLQRNIDNQEKQLAQKQASLFNEVGEKRTDA 270

Query: 239 LTRLT-----------------LRSPVRGIVKDIEVNTLGGVVQPGGQVMKIVPMDERLL 281
              L                  + SPV GI++ I  N+ G V+QPGG V  IVP     L
Sbjct: 271 QAELLGIVARLKSSDSLVQQNRVTSPVDGIIQSIPNNSAGSVIQPGGTVAVIVPTTPTAL 330

Query: 282 IETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGISPDTLQDEVKPEIYYYRVF 341
           +E +++PRDI F+   Q A++KI A+DYS YG +DG V  ISP T  DE      +Y+V 
Sbjct: 331 LEAKLSPRDIGFVTVGQKARIKIDAFDYSRYGAIDGLVKKISPSTDADEKGG--VFYKVQ 388

Query: 342 IRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIKPL-NRAKEALRER 394
           I  ++    ++  K  A++PGM    DI TG+KT+  YL KP+     EA  ER
Sbjct: 389 IAIDKPYFGDQPDK-LALIPGMTGEADIVTGDKTVFQYLWKPVFTNVTEAFGER 441