Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  251 bits (640), Expect = 4e-71
 Identities = 162/432 (37%), Positives = 231/432 (53%), Gaps = 64/432 (14%)

Query: 25  IITLCALMLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGIVAQMSVAEGDLVE 84
           II   A +  +FL WA + E+  V+TGTGKVIPSS+ QVIQS +GGI+ ++ V EG  V 
Sbjct: 31  IIWALAALAFSFLVWAYFAELDRVTTGTGKVIPSSQVQVIQSLDGGIMKELYVREGMTVT 90

Query: 85  RGQVLAQLDPTKTASSVGESEAKYRAARASQARLQAEVTG------------------KP 126
           +GQ L ++D T+  S   + E +  + +A+  RL+AE+                    +P
Sbjct: 91  KGQPLVRIDDTRFRSDFAQQEQEVYSLQANVIRLRAELNSITISDVAADWREQVKIAKQP 150

Query: 127 LTFPESLRDSP-DLIDAETALYQTRRRGLEQTLA---------------------GIQDS 164
           L FP  L +S  DLI+ +   Y  R   L   L                       +  S
Sbjct: 151 LQFPPELTESEHDLIERQRDEYSGRLDNLSNQLEILARQIQQKQQETEELASKINTLTTS 210

Query: 165 LQLVRSELKITENLAKMGASSRVEVIRLNRQ----RSELE-----------------LKA 203
            QLV  EL++T  LA  G    VE+++L R     R EL                  LK 
Sbjct: 211 FQLVTRELELTRPLADKGIVPEVELLKLERNVNDIRGELSSLRLLRPKLKASQDEAILKR 270

Query: 204 NEARSDYLVRAREELAKASAEADALSEVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGGV 263
            EA   Y   AR +L +       ++E   G  D +++  + SPV G +K + +NTLGGV
Sbjct: 271 REAVFVYAAEARTQLNEMQTRLSRINEAQVGARDKVSKAEIVSPVNGTIKTVHINTLGGV 330

Query: 264 VQPGGQVMKIVPMDERLLIETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGIS 323
           VQPG  +++IVP +++LLIET+I P+DIAF+HP   A VK++AYD++ YGGL+G V  IS
Sbjct: 331 VQPGIDIIEIVPSEDQLLIETKIIPKDIAFLHPGLPAVVKVTAYDFTRYGGLNGVVEHIS 390

Query: 324 PDTLQDEVKPEIYYYRVFIRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIKP 383
            DT QDE     Y  RV  RTE  SL    G    I+PGM+ TVD+ TG++++L+Y++ P
Sbjct: 391 ADTTQDEEGNSFYLVRV--RTELSSLTKDDGTLMPIIPGMLTTVDVITGQRSVLEYILNP 448

Query: 384 LNRAKE-ALRER 394
           + RA++ ALRER
Sbjct: 449 ILRARDTALRER 460