Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 484 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  254 bits (650), Expect = 3e-72
 Identities = 158/432 (36%), Positives = 237/432 (54%), Gaps = 64/432 (14%)

Query: 25  IITLCALMLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGIVAQMSVAEGDLVE 84
           II   A M+A FL WA + E+  V+TG+GKVIPSS+ QVIQS +GGI+ ++ V +GDLV 
Sbjct: 55  IIWALAAMVACFLLWAGFAELDTVTTGSGKVIPSSQVQVIQSLDGGIMQELFVRDGDLVT 114

Query: 85  RGQVLAQLDPTKTASSVGESEAKYRAARASQARLQAE------------------VTGKP 126
           +GQ L ++D T+  S   + E +    + +  R++AE                  +T K 
Sbjct: 115 KGQPLVRIDDTRFRSDFAQQEQEVFGLKTNAIRMRAELDSILISDMTSDWREQVKITKKD 174

Query: 127 LTFPESL-RDSPDLIDAETALYQTRR-----------RGLEQTLAGIQD----------S 164
           L FP+S+ +  P L+  +   Y  R            R ++Q    I D          S
Sbjct: 175 LVFPDSIIQAEPALVKRQQEEYSGRLDNLSNQLEILVRQIQQRQQEIDDLASKTTTLTTS 234

Query: 165 LQLVRSELKITENLAKMGASSRVEVIRLNRQRSELE---------------------LKA 203
           +QL+  EL++T  LAK G    VE+++L R  ++ +                     LK 
Sbjct: 235 MQLISRELELTRPLAKKGIVPEVELLKLERAVNDAQGELNSLRLLRPKLKAALDEAILKR 294

Query: 204 NEARSDYLVRAREELAKASAEADALSEVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGGV 263
            EA   Y    R +L +       ++E   G  D +++  + SPV G +K + +NTLGGV
Sbjct: 295 REAVFVYAADLRAQLNETQTRLSRMNEAQVGAQDKVSKAIITSPVNGTIKTVHINTLGGV 354

Query: 264 VQPGGQVMKIVPMDERLLIETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGIS 323
           VQPG  +++IVP +++LLIET+I P+DIAF+H    A VK++AYD++ YGGL G V  IS
Sbjct: 355 VQPGVDIIEIVPSEDQLLIETKILPKDIAFLHTGLPAVVKVTAYDFTRYGGLKGTVEHIS 414

Query: 324 PDTLQDEVKPEIYYYRVFIRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIKP 383
            DT QDE      +Y + +RTE+ SL    G +  I+PGM+ TVD+ TG+++IL+Y++ P
Sbjct: 415 ADTSQDEEGNS--FYLIKVRTEESSLIKDDGTQMPIIPGMLTTVDVITGQRSILEYILNP 472

Query: 384 LNRAKE-ALRER 394
           + RAK+ ALRER
Sbjct: 473 ILRAKDTALRER 484