Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 441 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  174 bits (442), Expect = 3e-48
 Identities = 122/399 (30%), Positives = 190/399 (47%), Gaps = 46/399 (11%)

Query: 39  WAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGIVAQMSVAEGDLVERGQVLAQLDPTKTA 98
           W+ +  + E++   G+VIP   +QVIQSF GG +A + V+EGDLV++G VLA      + 
Sbjct: 46  WSLFTNIEEIAKAKGQVIPLGHQQVIQSFSGGTLASILVSEGDLVKKGDVLANFIAIDSQ 105

Query: 99  SSVGESEAKYRAARASQARLQAEVTGKPLTFPESLRDSPDLID----------------- 141
           ++  E E+K         R  A +  +   F   L   P+L+                  
Sbjct: 106 AAAEELESKQANLVLKIERYSAFIESREANFASYLESHPNLVKGHISDLERMNNEKQAII 165

Query: 142 ----AETALYQTRRRGLEQTLAGIQDSLQLVRSELKITENLAKMGASSRVEVIRLNRQRS 197
               AE A  +     L+Q +  ++  +   +  + + E++ +  A S++ ++   ++  
Sbjct: 166 QSSLAEIAKSKAELASLDQEIPPLKHQITSAQQTINMMESIKESQAVSKLTMLESQQKLD 225

Query: 198 EL--ELKANEARSDYLVRAREELAKA--SAEADALSEVIRGRSDSLTRL----------- 242
               ELK+ E +   L R  E L +     +A  L EV   R+D+   L           
Sbjct: 226 SYIRELKSMEGKQQVLARDIENLQRQLEQKQATLLKEVGEARTDAQAELLGITARLKSSD 285

Query: 243 ------TLRSPVRGIVKDIEVNTLGGVVQPGGQVMKIVPMDERLLIETRIAPRDIAFIHP 296
                 T+ SPV GI++ I   + G V+QPGG V  IVP     L+E +++PRDI F+  
Sbjct: 286 SQVQQNTITSPVDGIIQSIPNTSSGSVIQPGGTVAVIVPTTPTALLEAKLSPRDIGFVSV 345

Query: 297 DQAAKVKISAYDYSVYGGLDGKVVGISPDTLQDEVKPEIYYYRVFIRTEQDSLQNKAGKR 356
            Q A++KI A+DYS YG LDG V  ISP T  DE      +Y+V I  ++    ++  K 
Sbjct: 346 GQKARIKIDAFDYSRYGALDGIVKRISPSTDADEKGG--VFYKVQISIDKPYFGDQPDK- 402

Query: 357 FAIVPGMIATVDIRTGEKTILDYLIKPL-NRAKEALRER 394
             ++PGM    DI TG+KT+  YL KP+     EA  ER
Sbjct: 403 LELIPGMTGEADIVTGDKTVFQYLWKPVFTNVTEAFGER 441