Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 411 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 72.4 bits (176), Expect = 2e-17
 Identities = 66/278 (23%), Positives = 125/278 (44%), Gaps = 31/278 (11%)

Query: 70  GIVAQMSVAEGDLVERGQVLAQLDPTKTASSVGESEAKYRAARASQARLQAEVTGKPLTF 129
           GI+ ++ V  GD VE+ +V+A++D  +  + + E+EAK R A A  AR++        ++
Sbjct: 71  GIIRKLHVKVGDRVEKDEVIAEIDDREQRAQLDEAEAKLRQAEAEAARVET-------SY 123

Query: 130 PESLRDSPDLIDAETALYQTRRRGLEQTLAGIQDSLQLVRSELKITENLAKMGASSRVEV 189
           P  +R++        A  Q  R   E     ++   +LV  +L    +L +    SR   
Sbjct: 124 PLQIREA-------EAQVQAARAESEYAALTMERKRKLVEQDLDARNSLDEAQQRSRSLS 176

Query: 190 IRLNRQRSELELKANEARSDYLVRAREELAKASAEADALSEVIRGRSDSLTRLTLRSPVR 249
             L  + + L+   NE R++     R+   +A+ +A A  E  R R   L+   +RSP+ 
Sbjct: 177 NVLVAREATLDRLRNEFRTE-----RKRTRQAAEQAKAALETARIR---LSYAVIRSPIS 228

Query: 250 GIVKDIEVNTLGGVVQPGGQVMKIVPM--DERLLIETRIAPRDIAFIHPDQAAKVKISAY 307
           GIV  +     G  V  G QV+ ++ +    RL +   +   D+  + P    + ++ + 
Sbjct: 229 GIVSQVTAPE-GETVVAGFQVVNLITILDPSRLEMWIYVDETDVGQVRPGLDVEFRVDSQ 287

Query: 308 DYSVYGGLDGKVVGISPDTLQDEVKPEIYYYRVFIRTE 345
               + G+  ++        Q E++  I YY+  +R +
Sbjct: 288 PEKTFRGVVDQIYP------QPEIRDNIVYYQALVRLD 319



 Score = 24.3 bits (51), Expect = 0.007
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)

Query: 63  VIQSFEGGIVAQMSVAEGDLVERG----QVLAQLDPTK 96
           VI+S   GIV+Q++  EG+ V  G     ++  LDP++
Sbjct: 222 VIRSPISGIVSQVTAPEGETVVAGFQVVNLITILDPSR 259