Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 439 a.a., type I secretion membrane fusion protein, HlyD family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  222 bits (566), Expect = 1e-62
 Identities = 154/432 (35%), Positives = 227/432 (52%), Gaps = 56/432 (12%)

Query: 13  GQDDQAVFRAGRIITLCALMLAAF----LAWAAWFEVTEVSTGTGKVIPSSREQVIQSFE 68
           G +   + R  R +T   L++ A     L WA W  + EVS   G+V+PS   + +++ E
Sbjct: 14  GAEASRMARPRRGLTAILLLIMALAGVGLVWAGWATIEEVSRADGRVVPSGSARGVETLE 73

Query: 69  GGIVAQMSVAEGDLVERGQVLAQLDPTKTASSVGESEAKYRAARASQARLQAEV------ 122
           GGIVA++ VAEGD V+ GQ L ++D T  ++ +GE  A+  A RA   RL+AE+      
Sbjct: 74  GGIVAEILVAEGDRVDAGQELVRIDDTGASADLGELAARRAALRARALRLEAELGDAAAV 133

Query: 123 ----TGKPLTFPESLRDSPDLIDAETALYQTRRRGLEQT--------------LAGIQDS 164
                G     P +LR+   L D+  A Y ++R  LE                LA   +S
Sbjct: 134 DFAPAGLAADDPLALRERA-LFDSRRASYVSQRAVLEAQVLQRRQEITELTNGLARSDES 192

Query: 165 LQLVRSELKITENLAKMGASSRVEVIRLNRQRSEL-------------------ELKANE 205
           L L+  E+ I EN    G   R ++I + R+R+ +                   E +A  
Sbjct: 193 LALLDEEIAIREN---SGVIPRAQIIPVERERTGMRSERDRLDSRRAQAEAALMEAEARL 249

Query: 206 ARSDYLVRAREELAKASAEADA--LSEVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGGV 263
              D L RA     ++    D   + E IR   D +TR  LR+PV G+V  + V++ G V
Sbjct: 250 TELDLLRRAEINAERSQTLNDLAIILESIRRAEDVVTRAALRAPVTGVVSALNVSSQGEV 309

Query: 264 VQPGGQVMKIVPMDERLLIETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGIS 323
           V PG +V++IVP    L IE R+ P DIAF+ P   AKVKI+A+D+++YG L G VV + 
Sbjct: 310 VTPGEEVLRIVPEGTGLEIEARLRPEDIAFVRPGLPAKVKITAFDFTIYGALPGHVVRVG 369

Query: 324 PDTLQDEVKPEIYYYRVFIRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIKP 383
            D  QD+   E  ++ + I+TE+  L  +  +   I PGM+A+VDI TGE+T+LDYL+KP
Sbjct: 370 ADAEQDDSTGET-FFPIIIQTEETQL-TRGQEVLEIRPGMVASVDILTGERTVLDYLLKP 427

Query: 384 LNRAK-EALRER 394
             +A+ EALRER
Sbjct: 428 FRKARAEALRER 439