Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella sp. ANA-3

 Score =  255 bits (651), Expect = 2e-72
 Identities = 166/463 (35%), Positives = 250/463 (53%), Gaps = 72/463 (15%)

Query: 1   MSNHELPASYLDGQDD-------QAVFRAGRIITLCALMLAAFLAWAAWFEVTEVSTGTG 53
           MS H L A+ LD  DD        A      II   A M+A FL WA + ++ +V+TG+G
Sbjct: 1   MSKH-LTANDLDMVDDVYGAIMTDAPSGHRLIIWALAAMVACFLLWAGFAKLDKVTTGSG 59

Query: 54  KVIPSSREQVIQSFEGGIVAQMSVAEGDLVERGQVLAQLDPTKTASSVGESEAKYRAARA 113
           KVIPSS+ QVIQS +GGI+ ++ V EGD+V +GQ L ++D T+  S   + E +    + 
Sbjct: 60  KVIPSSQVQVIQSLDGGIMQELFVREGDIVTKGQPLVRIDDTRFRSDFAQQEQEVLGLKT 119

Query: 114 SQARLQAE------------------VTGKPLTFPESLRDS-PDLIDAETALYQTRR--- 151
           +  R++AE                  +T K L FP+S+ ++ P L+  +   Y  R    
Sbjct: 120 NAIRMRAELDSILISDMTSDWREQVKITKKALVFPDSITEAEPALVRRQQEEYNGRLDNL 179

Query: 152 --------RGLEQTLAGIQD----------SLQLVRSELKITENLAKMGASSRVEVIRLN 193
                   R ++Q    I D          S+QL+  EL++T  LAK G    VE+++L 
Sbjct: 180 SNQLEILVRQIQQRQQEIDDLASKTTTLTTSMQLISRELELTRPLAKKGIVPEVELLKLE 239

Query: 194 RQRSELE---------------------LKANEARSDYLVRAREELAKASAEADALSEVI 232
           R  ++ +                     LK  EA   Y    R +L +       ++E  
Sbjct: 240 RAVNDAQGELNSLRLLRPKLKAALDEAILKRREAVFVYAADLRAQLNETQTRLSRMNEAQ 299

Query: 233 RGRSDSLTRLTLRSPVRGIVKDIEVNTLGGVVQPGGQVMKIVPMDERLLIETRIAPRDIA 292
            G  D +++  + SPV G +K + +NTLGGVVQPG  +++IVP +++LLIET+I P+DIA
Sbjct: 300 VGAQDKVSKAVITSPVNGTIKTVHINTLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIA 359

Query: 293 FIHPDQAAKVKISAYDYSVYGGLDGKVVGISPDTLQDEVKPEIYYYRVFIRTEQDSLQNK 352
           F+H    A VK++AYD++ YGGL G V  IS DT QD+      +Y + +RTE+ SL   
Sbjct: 360 FLHTGLPAVVKVTAYDFTRYGGLKGTVEHISADTSQDDEGNS--FYLIKVRTEESSLIKD 417

Query: 353 AGKRFAIVPGMIATVDIRTGEKTILDYLIKPLNRAKE-ALRER 394
            G +  I+PGM+ TVD+ TG+++IL+Y++ P+ RAK+ ALRER
Sbjct: 418 DGTQMPIIPGMLTTVDVITGQRSILEYILNPILRAKDTALRER 460