Pairwise Alignments

Query, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 420 a.a., tricarboxylate porin (from data) from Pseudomonas stutzeri RCH2

 Score =  241 bits (615), Expect = 3e-68
 Identities = 155/447 (34%), Positives = 227/447 (50%), Gaps = 30/447 (6%)

Query: 1   MPSAFRFTPLFIALTATIPFAAQADEDKADGFIEGSSFNLHFRNAYFNRD-NHNAGVRDT 59
           M +A R +P    L   +  A+ A   +A  FIE SS  L  +N Y NRD    +G    
Sbjct: 1   MLTAVRRSPAPARLALAVAAASLAPLAQA-AFIEDSSATLQTQNIYLNRDFREGSGQSKR 59

Query: 60  REWGQGAVARFESGYTPGVVGFGLDAHAMLGLKLDGGGGHAGTSILPEHIKDDGELGAAP 119
            EW QG +   +SG+T G VG GLDA  MLG+KLD GGG  GT +LP H  DD   G+ P
Sbjct: 60  EEWTQGFILDVQSGFTEGTVGVGLDALGMLGIKLDSGGGRTGTDLLPVH--DD---GSTP 114

Query: 120 HSFSTAGAAVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEG 179
             FS  G   K K  +TEL+ G      PV+   ++R LPQ F G + T+  I+GL L G
Sbjct: 115 DEFSRLGLTAKAKIAETELRYGSHIPEMPVVKASDSRTLPQVFEGGTATSKDIEGLTLIG 174

Query: 180 GQVS--FTHPYNQSGHRRIDTYYGSLDEHDKSKHLNWAGASWSGTEHITANLYAAELKDI 237
           G++          S   +++          ++ HL +AGA ++  +++T   Y  EL D+
Sbjct: 175 GRLDKVIDRASTNSQDLQLNNKNSRFAGAAEADHLTFAGAEYAFNKNLTGRYYYGELDDV 234

Query: 238 WNQYYADFDYTYVVNDLVSLNPGVHFYHTQDTGQALLGKIDNNTYSVHFTVNAGFHSVTA 297
           + Q++        + D  +L+  +    + DTG A  GKIDN  ++     + G H V+ 
Sbjct: 235 YRQHFFGLLAVKPLTDNSALSADLRVMFSDDTGAANAGKIDNQAWNGMLGYSLGGHKVSL 294

Query: 298 AYQRVNGNTPFDYINLGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGVGVPGLSTSLS 357
            YQ++ G+T + YI+ G   +L N    +DF   +ERSW+ +Y Y+FA +G+PGL+    
Sbjct: 295 GYQQMRGDTGYAYID-GSDPFLVNFVQINDFANADERSWQARYDYNFAAMGIPGLTFLTR 353

Query: 358 YSRGEADLTKATQDTTHYDYYREDGKNAMHWERDLDVKYVFQEGDLKDLSVLVRYATHRG 417
           Y  G         D   Y+     G N   WERD+++KYV Q G LK+++V +R A  R 
Sbjct: 354 YVSG---------DNAEYN----GGSNGSEWERDIELKYVVQSGPLKNVAVRMRNAMFRS 400

Query: 418 SQGYASIDSNSDNDELRVIVDYPLNVF 444
                  D   D DE R+IV Y L ++
Sbjct: 401 -------DFARDADENRLIVSYSLPIW 420