Pairwise Alignments

Query, 446 a.a., Methyl-accepting chemotaxis transducer/sensory box protein from Pseudomonas putida KT2440

Subject, 500 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

 Score =  237 bits (605), Expect = 6e-67
 Identities = 146/406 (35%), Positives = 217/406 (53%), Gaps = 36/406 (8%)

Query: 33  SSLDSEMLVLQLDPQGRIEMVNGNFESEMLYRAEQLLGRNIEDIVPAHVKSLDFYQRMKS 92
           ++L + M +++ D  G I   N NF + M YR +++ G+     V    +    Y+    
Sbjct: 15  TALSTSMALIEFDLDGTILAANTNFLTVMGYRLDEVRGKKHSLFVEPAERDSAEYRAFWD 74

Query: 93  AISRGEHLNGAFRLLRGNGQEAWLRSILQPVKNSEGRIKYFTLHSSDLTRTIETSREHES 152
            + RG  L   F+ +   G+E WL +   P+    G+       ++D+TR    + E + 
Sbjct: 75  QLRRGTFLAREFKRVGKGGKEIWLEASYNPILGLGGKPTGVLKIATDITRKKAEAVELQE 134

Query: 153 LIKALMRSTAVIEFDLDGIILTANDRFLATVGYRLEQIRGKHHRMFCEPQEVNSAGYQAF 212
            + A+ RS AVIEF +DG ILTAN+ FL T+GYRLE I+GK+H +F  P E +SA Y+ F
Sbjct: 135 KVAAISRSQAVIEFAMDGTILTANENFLKTMGYRLEDIQGKNHSLFIAPGERDSAEYRQF 194

Query: 213 WERLRRGEYIAERFKRIDAHGRVIWLEASYNPIFDAHDVLYKVVKFATVITDQVNQELAV 272
           W+ LRRGE+ A +F RI   GRV+WLEASYNPI +     YKVVKFAT I+ +  +  A+
Sbjct: 195 WDILRRGEFQARQFMRIGKGGRVVWLEASYNPILNLDGKPYKVVKFATDISGRKEENAAL 254

Query: 273 AE--------------------------AADVAYNTSLGTDVSARKATEVVTQTVTVMRG 306
           A+                           A  A  TS  + + +  A E+ T    + R 
Sbjct: 255 AKQFETGVKATVETVASSAGKMQNTAQAMAAAAEQTSQQSSIVSTAAEELGTSVSEIARQ 314

Query: 307 LEASMQEAADGIQALDTQSRVIGSII----------KTISDIAGQTNLLALNAAIEAARA 356
           +  + +   D +       +++G ++          + I+DIA QTNLLALNA IEAARA
Sbjct: 315 IAQATRVTDDAVAETKASEKLVGELVTAADKIGAVSQLIADIASQTNLLALNATIEAARA 374

Query: 357 GEQGRGFAVVADEVRQLASRTSTATEEIARVVQQNEQLAQAAVSII 402
           G+ G+GFAVVA EV+ LA++T+ ATEEI + V   +  ++A  S I
Sbjct: 375 GDAGKGFAVVASEVKSLANQTAKATEEIEQQVSGIQDSSRATASAI 420



 Score =  122 bits (306), Expect = 3e-32
 Identities = 61/121 (50%), Positives = 81/121 (66%)

Query: 154 IKALMRSTAVIEFDLDGIILTANDRFLATVGYRLEQIRGKHHRMFCEPQEVNSAGYQAFW 213
           + AL  S A+IEFDLDG IL AN  FL  +GYRL+++RGK H +F EP E +SA Y+AFW
Sbjct: 14  LTALSTSMALIEFDLDGTILAANTNFLTVMGYRLDEVRGKKHSLFVEPAERDSAEYRAFW 73

Query: 214 ERLRRGEYIAERFKRIDAHGRVIWLEASYNPIFDAHDVLYKVVKFATVITDQVNQELAVA 273
           ++LRRG ++A  FKR+   G+ IWLEASYNPI         V+K AT IT +  + + + 
Sbjct: 74  DQLRRGTFLAREFKRVGKGGKEIWLEASYNPILGLGGKPTGVLKIATDITRKKAEAVELQ 133

Query: 274 E 274
           E
Sbjct: 134 E 134



 Score = 58.2 bits (139), Expect = 6e-13
 Identities = 79/402 (19%), Positives = 151/402 (37%), Gaps = 28/402 (6%)

Query: 13  KLKQEIRQLREDLMSIEQVKSSLDSEMLVLQLDPQGRIEMVNGNFESEMLYRAEQLLGRN 72
           K+  +I + + + + +++  +++     V++    G I   N NF   M YR E + G+N
Sbjct: 117 KIATDITRKKAEAVELQEKVAAISRSQAVIEFAMDGTILTANENFLKTMGYRLEDIQGKN 176

Query: 73  IEDIVPAHVKSLDFYQRMKSAISRGEHLNGAFRLLRGNGQEAWLRSILQPVKNSEGR--- 129
               +    +    Y++    + RGE     F  +   G+  WL +   P+ N +G+   
Sbjct: 177 HSLFIAPGERDSAEYRQFWDILRRGEFQARQFMRIGKGGRVVWLEASYNPILNLDGKPYK 236

Query: 130 -IKYFTLHSSDLTRTIETSREHESLIKALMRSTAVIEFDLDGIILTANDRFLATVGYRLE 188
            +K+ T  S         +++ E+ +KA + + A     +     TA     A      E
Sbjct: 237 VVKFATDISGRKEENAALAKQFETGVKATVETVASSAGKMQN---TAQAMAAAA-----E 288

Query: 189 QIRGKHHRMFCEPQEVNSAGYQAFWERLRRGEYIAERFKRIDAHGRVIWLEASYNPIFDA 248
           Q   +   +    +E+ ++       ++ +   + +     DA       E     +  A
Sbjct: 289 QTSQQSSIVSTAAEELGTS-VSEIARQIAQATRVTD-----DAVAETKASEKLVGELVTA 342

Query: 249 HDVLYKVVKFATVITDQVNQEL--AVAEAADVAYNTSLGTDVSARKATEVVTQTVTVMRG 306
            D +  V +    I  Q N     A  EAA  A +   G  V A +   +  QT      
Sbjct: 343 ADKIGAVSQLIADIASQTNLLALNATIEAAR-AGDAGKGFAVVASEVKSLANQTAKATEE 401

Query: 307 LEASMQEAADGIQALDTQSRVIGSIIKTISDIAGQTNLLALNAAIEAARAGEQGRGFAVV 366
           +E  +    D  +A  +  R IG +I  +S+I+   +  A   A       +   G    
Sbjct: 402 IEQQVSGIQDSSRATASAIRQIGLVIAQVSEISASISGAAEEQAAATREVSQNING---- 457

Query: 367 ADEVRQLASRTSTATEEIARVVQQNEQLAQAAVSIIDTSKRQ 408
              V Q A++T  ++ E+  V Q     A    + +D   R+
Sbjct: 458 ---VEQAAAQTGRSSTELLSVAQSMSHQADDLETRVDAFLRK 496