Pairwise Alignments

Query, 446 a.a., Methyl-accepting chemotaxis transducer/sensory box protein from Pseudomonas putida KT2440

Subject, 559 a.a., PAS domain-containing methyl-accepting chemotaxis protein from Rhodopseudomonas palustris CGA009

 Score =  223 bits (569), Expect = 9e-63
 Identities = 127/388 (32%), Positives = 206/388 (53%), Gaps = 3/388 (0%)

Query: 41  VLQLDPQGRIEMVNGNFESEMLYRAEQLLGRNIEDIVPAHVKSLDFYQRMKSAISRGEHL 100
           V++ +  G I   N NF   + Y  +++ G +    V    +    Y+   +A++RGE+ 
Sbjct: 147 VIEFNMDGTIRTANENFLKTIGYTLDEIKGEHHNMFVEPADRDSAAYREFWAALNRGEYQ 206

Query: 101 NGAFRLLRGNGQEAWLRSILQPVKNSEGRIKYFTLHSSDLTRTIETSREHESLIKALMRS 160
              ++ +   G+E WL++   P+ + +GR       ++D+T     + +    I A+ +S
Sbjct: 207 AAEYKRIGKGGREIWLQASYNPIFDDKGRPAKVVKFATDVTEQKLRNADMAGQIAAIGKS 266

Query: 161 TAVIEFDLDGIILTANDRFLATVGYRLEQIRGKHHRMFCEPQEVNSAGYQAFWERLRRGE 220
            AVIEFD+DG +LTAND FL  +GY L +I+G+ H MF +P E   A Y+ FW  L RGE
Sbjct: 267 QAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQPHSMFVDPSERAGAAYREFWASLNRGE 326

Query: 221 YIAERFKRIDAHGRVIWLEASYNPIFDAHDVLYKVVKFATVITDQVNQELAVAEAADVAY 280
           Y A  +KRI   GR ++++ASYNPI D +   +KVVKFAT +T QV   +       +  
Sbjct: 327 YQAAEYKRIGKGGREVYIQASYNPILDLNGRPFKVVKFATDVTKQVLARIGNERVRGMME 386

Query: 281 NTSLGTD---VSARKATEVVTQTVTVMRGLEASMQEAADGIQALDTQSRVIGSIIKTISD 337
             + G +    S R+ +  + ++     G    +  A    Q L + ++ +  I++ I++
Sbjct: 387 TVAAGAEELNTSVREISSTMAKSRETAAGAVDRVSNADAQAQRLTSAAQSMSGIVELINN 446

Query: 338 IAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSTATEEIARVVQQNEQLAQA 397
           I GQ NLLALNA IE+ARAGE GRGFAVVA EV+ LA++   AT++I   +     ++  
Sbjct: 447 ITGQINLLALNATIESARAGEAGRGFAVVAAEVKNLANQAKQATDKIGEEISSLNSISGD 506

Query: 398 AVSIIDTSKRQAEQGLALADETGSVIVE 425
               ++  K+   +       T + + E
Sbjct: 507 VAMALNAIKQAINEVSEYVTSTAAAVEE 534



 Score =  135 bits (339), Expect = 4e-36
 Identities = 69/147 (46%), Positives = 95/147 (64%), Gaps = 1/147 (0%)

Query: 119 ILQPVKNSEGRIKYFTLHSSDLTRTIETSREHESLIKALMRSTAVIEFDLDGIILTANDR 178
           I  P+ N++G      +  +D +  ++ + +    + A  RS AVIEF++DG I TAN+ 
Sbjct: 104 IATPINNADGSRAGVVVEWADASIRLQ-NLDFAGQVAAANRSQAVIEFNMDGTIRTANEN 162

Query: 179 FLATVGYRLEQIRGKHHRMFCEPQEVNSAGYQAFWERLRRGEYIAERFKRIDAHGRVIWL 238
           FL T+GY L++I+G+HH MF EP + +SA Y+ FW  L RGEY A  +KRI   GR IWL
Sbjct: 163 FLKTIGYTLDEIKGEHHNMFVEPADRDSAAYREFWAALNRGEYQAAEYKRIGKGGREIWL 222

Query: 239 EASYNPIFDAHDVLYKVVKFATVITDQ 265
           +ASYNPIFD      KVVKFAT +T+Q
Sbjct: 223 QASYNPIFDDKGRPAKVVKFATDVTEQ 249



 Score = 41.6 bits (96), Expect = 7e-08
 Identities = 60/339 (17%), Positives = 131/339 (38%), Gaps = 60/339 (17%)

Query: 33  SSLDSEMLVLQLDPQGRIEMVNGNFESEMLYRAEQLLGRNIEDIVPAHVKSLDFYQRMKS 92
           +++     V++ D  G +   N NF   + Y   ++ G+     V    ++   Y+   +
Sbjct: 261 AAIGKSQAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQPHSMFVDPSERAGAAYREFWA 320

Query: 93  AISRGEHLNGAFRLLRGNGQEAWLRSILQPVKNSEGRIKYFTLHSSDLTRTIETSREHES 152
           +++RGE+    ++ +   G+E ++++   P+ +  GR       ++D+T+ +        
Sbjct: 321 SLNRGEYQAAEYKRIGKGGREVYIQASYNPILDLNGRPFKVVKFATDVTKQV-------- 372

Query: 153 LIKALMRSTAVIEFDLDGIILTANDRFLATVGYRLEQIRGKHHRMFCEPQEVNSAGYQAF 212
                                      LA +G   E++RG    +    +E+N++  +  
Sbjct: 373 ---------------------------LARIGN--ERVRGMMETVAAGAEELNTSVREIS 403

Query: 213 WERLRRGEYIAERFKRIDAHGRVIWLEASYNPIFDAHDVLYKVVKFATVITDQVNQELAV 272
               +  E  A       A  RV   +A    +  A   +  +V+    IT Q+N  LA+
Sbjct: 404 STMAKSRETAA------GAVDRVSNADAQAQRLTSAAQSMSGIVELINNITGQINL-LAL 456

Query: 273 AEAADVAYNTSLGTDVS------------ARKATEVVTQTVTVMRGLEASMQEAADGI-Q 319
               + A     G   +            A++AT+ + + ++ +  +   +  A + I Q
Sbjct: 457 NATIESARAGEAGRGFAVVAAEVKNLANQAKQATDKIGEEISSLNSISGDVAMALNAIKQ 516

Query: 320 ALDTQSRVIGSIIKTI---SDIAGQTNLLALNAAIEAAR 355
           A++  S  + S    +   S +  + +     AA+EAAR
Sbjct: 517 AINEVSEYVTSTAAAVEEQSTVTSEMSSSMQRAAVEAAR 555