Pairwise Alignments

Query, 446 a.a., Methyl-accepting chemotaxis transducer/sensory box protein from Pseudomonas putida KT2440

Subject, 560 a.a., PAS domain-containing methyl-accepting chemotaxis protein from Rhodopseudomonas palustris CGA009

 Score =  229 bits (584), Expect = 2e-64
 Identities = 129/388 (33%), Positives = 205/388 (52%), Gaps = 3/388 (0%)

Query: 41  VLQLDPQGRIEMVNGNFESEMLYRAEQLLGRNIEDIVPAHVKSLDFYQRMKSAISRGEHL 100
           V++    G +   N NF + M Y   ++ GR+    V   V+    Y+   + ++RGE+ 
Sbjct: 148 VIEFAMDGTVLTANDNFLAAMEYSLGEIKGRHHSMFVEPSVRESSDYREFWARLNRGEYF 207

Query: 101 NGAFRLLRGNGQEAWLRSILQPVKNSEGRIKYFTLHSSDLTRTIETSREHESLIKALMRS 160
            G F+ +   G+E W+ +   P+ ++ G+      +++D+T     + +    I A+ +S
Sbjct: 208 PGEFKRIGKGGKEVWILASYNPILDARGKPFKVVKYATDVTAQKLKNADFSGQIDAIRKS 267

Query: 161 TAVIEFDLDGIILTANDRFLATVGYRLEQIRGKHHRMFCEPQEVNSAGYQAFWERLRRGE 220
            AVIEF +DG +L AND FL  +GY L +I+G+HH MF +P E  SA Y+AFW  L RG+
Sbjct: 268 QAVIEFSIDGTVLDANDNFLHALGYSLGEIKGRHHSMFIDPAERESAAYRAFWAALGRGD 327

Query: 221 YIAERFKRIDAHGRVIWLEASYNPIFDAHDVLYKVVKFATVITDQVNQELAVAEAADVAY 280
           Y A  +KRI   GR +W++ASYNPI D +   +KVVK+A   T QV   L       +  
Sbjct: 328 YQAGEYKRIGKGGREVWIQASYNPILDLNGRPFKVVKYAADTTRQVLTRLGNERVRAMME 387

Query: 281 NTSLGTD---VSARKATEVVTQTVTVMRGLEASMQEAADGIQALDTQSRVIGSIIKTISD 337
           + + G +    S R+ +E +T++          +  A      L+  ++ +  I++ I+ 
Sbjct: 388 SVAAGAEELNASVREISEAMTKSRQTAMNAVGEVDAADSQANQLNDAAQAMSGIVELINH 447

Query: 338 IAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSTATEEIARVVQQNEQLAQA 397
           I GQ NLLALNA IE+ARAGE GRGFAVVA EV+ LA++   AT++I   +     ++  
Sbjct: 448 ITGQINLLALNATIESARAGEAGRGFAVVAAEVKNLANQAKQATDKIGTEISNLTSVSGD 507

Query: 398 AVSIIDTSKRQAEQGLALADETGSVIVE 425
            V  +   K   +        T + + E
Sbjct: 508 VVGALGKIKNAIQNVSEYVSSTAAAVEE 535



 Score =  160 bits (406), Expect = 7e-44
 Identities = 83/233 (35%), Positives = 128/233 (54%)

Query: 33  SSLDSEMLVLQLDPQGRIEMVNGNFESEMLYRAEQLLGRNIEDIVPAHVKSLDFYQRMKS 92
           ++L+    V++ D  G +   N NF + + Y   ++ G++    V         Y+   +
Sbjct: 18  AALNRSQAVIEFDLDGNVIDANDNFLTALGYSLPEIKGKHHRMFVDPSEHDSTAYREFWT 77

Query: 93  AISRGEHLNGAFRLLRGNGQEAWLRSILQPVKNSEGRIKYFTLHSSDLTRTIETSREHES 152
           A+  G++  G F  +   G+E W+++   P+ +  G+       ++D+T     S E   
Sbjct: 78  ALRAGQYQAGEFHRIGKGGREVWIQASYNPILDKNGKPTGVVKFAADITAAKTQSLEDAG 137

Query: 153 LIKALMRSTAVIEFDLDGIILTANDRFLATVGYRLEQIRGKHHRMFCEPQEVNSAGYQAF 212
            + A+ R+ AVIEF +DG +LTAND FLA + Y L +I+G+HH MF EP    S+ Y+ F
Sbjct: 138 KLAAIGRAQAVIEFAMDGTVLTANDNFLAAMEYSLGEIKGRHHSMFVEPSVRESSDYREF 197

Query: 213 WERLRRGEYIAERFKRIDAHGRVIWLEASYNPIFDAHDVLYKVVKFATVITDQ 265
           W RL RGEY    FKRI   G+ +W+ ASYNPI DA    +KVVK+AT +T Q
Sbjct: 198 WARLNRGEYFPGEFKRIGKGGKEVWILASYNPILDARGKPFKVVKYATDVTAQ 250



 Score =  125 bits (314), Expect = 3e-33
 Identities = 62/119 (52%), Positives = 78/119 (65%)

Query: 152 SLIKALMRSTAVIEFDLDGIILTANDRFLATVGYRLEQIRGKHHRMFCEPQEVNSAGYQA 211
           +++ AL RS AVIEFDLDG ++ AND FL  +GY L +I+GKHHRMF +P E +S  Y+ 
Sbjct: 15  AMLAALNRSQAVIEFDLDGNVIDANDNFLTALGYSLPEIKGKHHRMFVDPSEHDSTAYRE 74

Query: 212 FWERLRRGEYIAERFKRIDAHGRVIWLEASYNPIFDAHDVLYKVVKFATVITDQVNQEL 270
           FW  LR G+Y A  F RI   GR +W++ASYNPI D +     VVKFA  IT    Q L
Sbjct: 75  FWTALRAGQYQAGEFHRIGKGGREVWIQASYNPILDKNGKPTGVVKFAADITAAKTQSL 133