Pairwise Alignments

Query, 446 a.a., Methyl-accepting chemotaxis transducer/sensory box protein from Pseudomonas putida KT2440

Subject, 437 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4

 Score =  251 bits (641), Expect = 3e-71
 Identities = 146/416 (35%), Positives = 236/416 (56%), Gaps = 10/416 (2%)

Query: 36  DSEML--------VLQLDPQGRIEMVNGNFESEMLYRAEQLLGRNIEDIVPAHVKSLDFY 87
           DS+ML         ++   +G+I   N  F S + YR E++ G++   +    + S   Y
Sbjct: 23  DSQMLRAIRQSAPFIEFTIEGKILSANQQFLSAIGYRLEEIQGQHHRLLCSPSLASSAAY 82

Query: 88  QRMKSAISRGEHLNGAFRLLRGNGQEAWLRSILQPVKNSEGRIKYFTLHSSDLTRTIETS 147
           +     ++ GE  +G F+    +G   W+ +   PV +  GRI      +SD+T+  + +
Sbjct: 83  RTFWQNLAMGEANHGTFQRQHKDGSPIWIEATYVPVADDTGRITKVVKIASDVTQEKQQA 142

Query: 148 REHESLIKALMRSTAVIEFDLDGIILTANDRFLATVGYRLEQIRGKHHRMFCEPQEVNSA 207
              E++  AL +S A IEF   G I+ AN  F + +GY LEQ++G+HHR+FC   E    
Sbjct: 143 ERQEAIFDALNKSLAYIEFTPQGEIIDANANFCSAMGYSLEQLKGQHHRLFCT--EAFMR 200

Query: 208 GYQAFWERLRRGEYIAERFKRIDAHGRVIWLEASYNPIFDAHDVLYKVVKFATVITDQVN 267
            +  FW  L +G + +  F+R+  HG+ IWLEA+YNP+FD    + +VVK A+ IT ++ 
Sbjct: 201 QHPDFWADLAKGRFQSGLFERVTRHGQAIWLEATYNPVFDDAGRVVRVVKLASDITPRIM 260

Query: 268 QELAVAEAADVAYNTSLGTDVSARKATEVVTQTVTVMRGLEASMQEAADGIQALDTQSRV 327
            + AV EA+ +A+ +++ T     +    ++   ++   ++ ++ +A   +  L  QS+ 
Sbjct: 261 HQQAVQEASQLAHQSAVETVEITGQGASTLSTATSLANEIDGAVADATRLMGELAQQSQQ 320

Query: 328 IGSIIKTISDIAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSTATEEIARV 387
           I  I+ TI+ +A QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA+ TS AT++I R+
Sbjct: 321 ISQIVHTIAKVADQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAANTSNATQDIERI 380

Query: 388 VQQNEQLAQAAVSIIDTSKRQAEQGLALADETGSVIVEIQDGAKRVVDVVGQFSSR 443
           V +N +L Q +   + + +++          T ++I EI+ GA++V D V    S+
Sbjct: 381 VARNSELTQVSEQGMQSIQQKVSLSNQQLAATQALIDEIRRGAQQVADTVNGLVSK 436



 Score =  108 bits (270), Expect = 3e-28
 Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 1/136 (0%)

Query: 149 EHESLIKALMRSTAVIEFDLDGIILTANDRFLATVGYRLEQIRGKHHRMFCEPQEVNSAG 208
           +   +++A+ +S   IEF ++G IL+AN +FL+ +GYRLE+I+G+HHR+ C P   +SA 
Sbjct: 22  DDSQMLRAIRQSAPFIEFTIEGKILSANQQFLSAIGYRLEEIQGQHHRLLCSPSLASSAA 81

Query: 209 YQAFWERLRRGEYIAERFKRIDAHGRVIWLEASYNPIFDAHDVLYKVVKFATVITDQVNQ 268
           Y+ FW+ L  GE     F+R    G  IW+EA+Y P+ D    + KVVK A+ +T Q  Q
Sbjct: 82  YRTFWQNLAMGEANHGTFQRQHKDGSPIWIEATYVPVADDTGRITKVVKIASDVT-QEKQ 140

Query: 269 ELAVAEAADVAYNTSL 284
           +    EA   A N SL
Sbjct: 141 QAERQEAIFDALNKSL 156



 Score = 57.4 bits (137), Expect = 9e-13
 Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 30/230 (13%)

Query: 13  KLKQEIRQLREDLMSIEQVKSSLDSEMLVLQLDPQGRIEMVNGNFESEMLYRAEQLLGRN 72
           K+  ++ Q ++     E +  +L+  +  ++  PQG I   N NF S M Y  EQL G++
Sbjct: 130 KIASDVTQEKQQAERQEAIFDALNKSLAYIEFTPQGEIIDANANFCSAMGYSLEQLKGQH 189

Query: 73  -----IEDIVPAHVKSLDFYQRMKSAISRGEHLNGAFRLLRGNGQEAWLRSILQPVKNSE 127
                 E  +  H    DF+    + +++G   +G F  +  +GQ  WL +   PV +  
Sbjct: 190 HRLFCTEAFMRQHP---DFW----ADLAKGRFQSGLFERVTRHGQAIWLEATYNPVFDDA 242

Query: 128 GRIKYFTLHSSDLTRTI-------ETSR-EHESLIKAL---------MRSTAVIEFDLDG 170
           GR+      +SD+T  I       E S+  H+S ++ +         + +   +  ++DG
Sbjct: 243 GRVVRVVKLASDITPRIMHQQAVQEASQLAHQSAVETVEITGQGASTLSTATSLANEIDG 302

Query: 171 IILTANDRFLATVGYRLEQIRGKHHRMFCEPQEVNSAGYQAFWERLRRGE 220
            +  A  R +  +  + +QI    H +     + N     A  E  R GE
Sbjct: 303 AVADAT-RLMGELAQQSQQISQIVHTIAKVADQTNLLALNAAIEAARAGE 351