Pairwise Alignments

Query, 446 a.a., Methyl-accepting chemotaxis transducer/sensory box protein from Pseudomonas putida KT2440

Subject, 435 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  263 bits (672), Expect = 8e-75
 Identities = 161/394 (40%), Positives = 225/394 (57%), Gaps = 5/394 (1%)

Query: 46  PQGRIEMVNGNFESEMLYRAEQLLGRNIEDIVPAHVKSLDFYQRMKSAISRGEHLNGAFR 105
           P+G I   N  F   M Y A ++LG++      A       YQ+    ++ G    G F+
Sbjct: 44  PKGEIIEANDIFLDVMGYSANEILGKHHRMFCTAQYSGSQEYQKFWQELAAGNAFTGTFQ 103

Query: 106 LLRGNGQEAWLRSILQPVKNSEGRIKYFTLHSSDLTRTIETSREHESLIKALMRSTAVIE 165
            L+ N    ++ +   PVKNS G +      ++D+T +        +++ AL RS AVIE
Sbjct: 104 RLKKNHIPVYVEASYFPVKNSAGDVVKIIKIANDVTASQLNLIAKNAILDALDRSQAVIE 163

Query: 166 FDLDGIILTANDRFLATVGYRLEQIRGKHHRMFCEPQEVNSAGYQAFWERLRRGEYIAER 225
           F  DG ++TAN  FL  + YRL++I+GKHH+MFC+ +         FW+RL  GE+   R
Sbjct: 164 FLPDGTVITANQNFLDIMHYRLDEIQGKHHKMFCDKEFYRIR--PDFWKRLAAGEHFTGR 221

Query: 226 FKRIDAHGRVIWLEASYNPIFDAHDVLYKVVKFATVITDQVNQELAVAEAADVAYNTSLG 285
           FKRIDAH  VIWLEA+YNPI+DA + +YK+VKFA+ I+ +VN  L   +A D+A  TS  
Sbjct: 222 FKRIDAHNNVIWLEATYNPIWDASNKVYKIVKFASDISHRVNTAL---QAVDMAAATSEQ 278

Query: 286 TDVSARKATEVVTQTVTVMRGLEASMQEAADGIQALDTQSRVIGSIIKTISDIAGQTNLL 345
           T      A +V+ + V     +   ++ A++    L  QS+ I  I+ TI  IA QTNLL
Sbjct: 279 TSQITTNAVQVLNEAVCTSHQIAEQVKNASNIGGELLVQSKNINDIVITIRGIAEQTNLL 338

Query: 346 ALNAAIEAARAGEQGRGFAVVADEVRQLASRTSTATEEIARVVQQNEQLAQAAVSIIDTS 405
           ALNAAIEAARAG+ GRGFAVVADEVR+LASRTSTAT EIA VVQQN  L +     +   
Sbjct: 339 ALNAAIEAARAGDLGRGFAVVADEVRKLASRTSTATSEIANVVQQNTDLIKNIDHQLSNI 398

Query: 406 KRQAEQGLALADETGSVIVEIQDGAKRVVDVVGQ 439
              A  G    +   + + ++ +G  + V +V Q
Sbjct: 399 TNVALHGEDSINHVAAGLADVGNGVSQFVAMVEQ 432



 Score = 83.6 bits (205), Expect = 1e-20
 Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 7/145 (4%)

Query: 136 HSSDLTRTIETSREHESLIKALMRSTAVIEFDLDGIILTANDRFLATVGYRLEQIRGKHH 195
           HSS  T     +   E+ + A+   TA I F   G I+ AND FL  +GY   +I GKHH
Sbjct: 16  HSSGFT----AAETLENELAAIRAYTAYICFTPKGEIIEANDIFLDVMGYSANEILGKHH 71

Query: 196 RMFCEPQEVNSAGYQAFWERLRRGEYIAERFKRIDAHGRVIWLEASYNPIFDAHDVLYKV 255
           RMFC  Q   S  YQ FW+ L  G      F+R+  +   +++EASY P+ ++   + K+
Sbjct: 72  RMFCTAQYSGSQEYQKFWQELAAGNAFTGTFQRLKKNHIPVYVEASYFPVKNSAGDVVKI 131

Query: 256 VKFATVIT-DQVN--QELAVAEAAD 277
           +K A  +T  Q+N   + A+ +A D
Sbjct: 132 IKIANDVTASQLNLIAKNAILDALD 156



 Score = 54.7 bits (130), Expect = 6e-12
 Identities = 31/154 (20%), Positives = 71/154 (46%), Gaps = 6/154 (3%)

Query: 13  KLKQEIRQLREDLMSIEQVKSSLDSEMLVLQLDPQGRIEMVNGNFESEMLYRAEQLLGRN 72
           K+  ++   + +L++   +  +LD    V++  P G +   N NF   M YR +++ G++
Sbjct: 133 KIANDVTASQLNLIAKNAILDALDRSQAVIEFLPDGTVITANQNFLDIMHYRLDEIQGKH 192

Query: 73  IEDIVPAHVKSL--DFYQRMKSAISRGEHLNGAFRLLRGNGQEAWLRSILQPVKNSEGRI 130
            +         +  DF++R    ++ GEH  G F+ +  +    WL +   P+ ++  ++
Sbjct: 193 HKMFCDKEFYRIRPDFWKR----LAAGEHFTGRFKRIDAHNNVIWLEATYNPIWDASNKV 248

Query: 131 KYFTLHSSDLTRTIETSREHESLIKALMRSTAVI 164
                 +SD++  + T+ +   +  A    T+ I
Sbjct: 249 YKIVKFASDISHRVNTALQAVDMAAATSEQTSQI 282