Pairwise Alignments

Query, 560 a.a., Medium-chain-fatty-acid CoA ligase from Pseudomonas putida KT2440

Subject, 542 a.a., AMP-dependent synthetase and ligase (NCBI) from Rhodospirillum rubrum S1H

 Score =  246 bits (628), Expect = 2e-69
 Identities = 168/521 (32%), Positives = 259/521 (49%), Gaps = 25/521 (4%)

Query: 34  REIVYRDQMRLTYPQLNERIARLANVLTEAGVKAGDTVAVMDWDSHRYLECMFAIPMIGA 93
           R  +   + R T+ +  +R  RLA+ L   G+   DTVAVM  ++    E  F +PM GA
Sbjct: 35  RPSLVHGKRRYTWAETAQRARRLASALRARGIGPEDTVAVMGANTPELYEAHFGVPMAGA 94

Query: 94  VVHTINVRLSPEQILYTMNHAEDRVVLVNSDFVGLYQAIAGQLTTVDKTLLLTDGPDKTA 153
           V++ +NVRL+ E+I + + H E RV+L +++F  +   IA  L  +D+ + + D  D   
Sbjct: 95  VLNALNVRLNAEEIAFILEHGEARVLLTDTEFSPI---IADALARIDRPITVIDIVDPEY 151

Query: 154 ELPGL-VGE--YEQLLAAASPRYDFP-DFDENSVATTFYTTGTTGNPKGVYFSHRQLVLH 209
           + PG  VGE  YE  LA   P  D+    DE    T  YT+GTTGNPKGV + HR   L+
Sbjct: 152 DGPGACVGEMEYEAFLAEGDPTADWRWPADEWESITLNYTSGTTGNPKGVVYHHRGAYLN 211

Query: 210 TLAEASVTGSIDSVRLLGSNDVYMPITPMFHVHAWGIPYAATMLGMKQVYPGRYEPDMLV 269
            L+     G       +  + VY+   PMFH + W  P+         V   R     + 
Sbjct: 212 ALSNIITWG-------MPHHAVYLWTLPMFHCNGWCFPWTMAANAGTNVCLRRVTAAGIF 264

Query: 270 KLWREEKVTFSHCVPTILQMLLNCPNAQGQDFGGW-KIIIGGSSLNRSLYQAALARGIQL 328
           +   EEKV+     P +L  L+N    + + F     ++   +    S+ +     G  +
Sbjct: 265 QAIAEEKVSHFCGAPIVLSFLINARPEERRSFDHQVNVMTAAAPPPASVLEKMQREGFCV 324

Query: 329 TAAYGMSETCPLISAAHLNDELQAGSEDERVTYRIKAGVPVPLVEAAIVDGEGNFL---P 385
           T  YG++ET    +     +       DE+   + + GV   LV+  ++ G+   +   P
Sbjct: 325 THVYGLTETYGPATVCAWKEPWNDLPMDEQARLKSRQGVRY-LVQEGLMVGDPETMEAVP 383

Query: 386 ADGETQGELVLRAPWLTMGYFKEPEKSEELWQGGWLHTGDVATLDGMGYIDIRDRIKDVI 445
           ADGE+ GE+  R      GY K PE + E ++GGW HTGD+  L   GY+ ++DR KD+I
Sbjct: 384 ADGESMGEVFFRGNITMKGYLKNPEATAEAFRGGWFHTGDLGVLHPDGYLQLKDRSKDII 443

Query: 446 KTGGEWVSSLDLEDLISRHPAVREVAVVGVADPQWGERPFALLVARDGHDIDAKALKEHL 505
            +GGE +SS+++E ++ RHP V   AVV   D +WGE P A +  RDG    A   ++ L
Sbjct: 444 ISGGENISSIEVEGVLHRHPDVVAAAVVAKPDEKWGETPKAYVELRDG----ATVTEDEL 499

Query: 506 KPFVEQGHINKWAIPSQIALVTEIPKTSVGKLDKKRIRQDI 546
             F    H+  +  P  +  V  +PKTS GK+ K  +R+ +
Sbjct: 500 VAFCRL-HLAHYKCPRDVE-VGPLPKTSTGKIQKFVLRRQV 538