Pairwise Alignments

Query, 560 a.a., Medium-chain-fatty-acid CoA ligase from Pseudomonas putida KT2440

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  166 bits (420), Expect = 2e-45
 Identities = 144/546 (26%), Positives = 254/546 (46%), Gaps = 63/546 (11%)

Query: 36  IVYRDQ-MRLTYPQLNERIARLANVLTEAGVKAGDTVAVMDWDSHRYLECMFAIPMIGAV 94
           +VY D+ +R TY + +ER   LA  L E G+K GD + +   +   +L  MFA   IG V
Sbjct: 25  LVYPDRNLRFTYKEFDERTDLLAKGLLEIGIKKGDHIGIWARNVPDWLTFMFATAKIGVV 84

Query: 95  VHTINVRLSPEQILYTMNHAEDRVVLVNSDF-----VGLYQAIAGQLTTVDKTLLLTD-- 147
           + T+N      ++ Y M  ++ + + +   F     + +   +  +L T  +  L ++  
Sbjct: 85  LVTVNTAYKSHELAYVMKQSDMKALAIIDSFRDVNYLEILYELVPELKTSQRGKLNSEEF 144

Query: 148 ---------------GPDKTAELPGLVGEY---EQLLAAASPRYDFPDFDENSVATTFYT 189
                          G   T EL  L+G Y   E+L+ A          D + V    YT
Sbjct: 145 PYLKNVIYVGQEKHRGMYNTTELM-LLGNYVSDEKLIEAKK------GLDSDDVINMQYT 197

Query: 190 TGTTGNPKGVYFSHRQLVLHTLAEASVTGSIDSVRLLGSNDVYMPITPMFHVHAWGIPYA 249
           +GTTG PKGV  +H+ ++ +           +  RL       +P+ P+FH   +GI   
Sbjct: 198 SGTTGFPKGVMLTHKNILNNGYYIGEKQKFTEEERLC------LPV-PLFH--CFGIVLG 248

Query: 250 ATML---GMKQVYPGRYEPDMLVKLWREEKVTFSHCVPTILQMLLNCPNAQGQDFGGWKI 306
              L   G   V    ++P +++   ++EK T  + VPT+     + P  +  D    + 
Sbjct: 249 VLALLTHGGTLVMLEIFDPLLVLAAIQKEKCTAVYGVPTMFIAEFSHPMFEMFDLSSLRT 308

Query: 307 -IIGGSSLNRSLYQAALARGI--QLTAAYGMSETCPLISAAHLNDELQAGSEDERVTYRI 363
            I+ GS+      +  ++     ++T +YG++E  P+ +   ++D  +   E        
Sbjct: 309 GIMAGSTCPIEAMKKVMSDMYMREITISYGLTEASPVFTMTSVDDPFEKRVES------- 361

Query: 364 KAGVPVPLVEAAIVDGEGNFLPADGETQGELVLRAPWLTMGYFKEPEKSEELWQ-GGWLH 422
             G  +P  E  I+D E     A G   GE+  R   +  GY+K PEK+ E+ +  GWLH
Sbjct: 362 -VGKAMPHCEVKIIDPETGETLAPGNV-GEICCRGYNVMKGYYKMPEKTAEVIEKDGWLH 419

Query: 423 TGDVATLDGMGYIDIRDRIKDVIKTGGEWVSSLDLEDLISRHPAVREVAVVGVADPQWGE 482
           +GD+A  D  GY  I  RIKD+I  GGE +   ++E+ +   P + +  VVG+ D ++GE
Sbjct: 420 SGDLAVEDEDGYYKIVGRIKDMIIRGGENIYPREIEEFLYTMPGINDAQVVGIPDEKYGE 479

Query: 483 RPFALLVARDGHDIDAKALKEHLKPFVEQGHINKWAIPSQIALVTEIPKTSVGKLDKKRI 542
              A ++ ++G++I     +E ++ F  +  I ++ +P  + +V E P T+ GK+ K ++
Sbjct: 480 IVGAFVIPKEGYEIK----EEDVRDFALE-KIARYKVPKHVFVVEEFPMTASGKIQKFKL 534

Query: 543 RQDIVQ 548
            +  V+
Sbjct: 535 TELAVE 540