Pairwise Alignments

Query, 332 a.a., Ribosomal RNA small subunit methyltransferase C from Pseudomonas putida KT2440

Subject, 375 a.a., 16S RNA G1207 methylase RsmC from Pseudomonas stutzeri RCH2

 Score = 85.1 bits (209), Expect = 3e-21
 Identities = 76/276 (27%), Positives = 119/276 (43%), Gaps = 10/276 (3%)

Query: 62  EAPEAAFDSAVLFLPKSRELAAYLLNALASRLAGRELYLVGEKRGGIEGAAKQL--QAFG 119
           E  +  FD  ++ +PK+  L    L  L  +L+     +       +  AA  L  Q  G
Sbjct: 103 EMAQGPFDLVLIRVPKTLALLEEQLIRLHGQLSPGAQVIAAAMIKHLPRAAGDLLEQYIG 162

Query: 120 KPRKLDSARHCQLWQVTIDQAPQAKPLESLAERFELALEDGPLQVVSLPGVFSHGRLDRG 179
             +   + +  +L   T  + P   P      R+ L  +   L++++   +F    LD G
Sbjct: 163 AVQASLAVKKARLLSATASEKPA--PQSPYPTRYRL--DQPKLELLNHANLFCREGLDIG 218

Query: 180 TALLLKHLDGLPGG-HMLDFGCGAGVLGATLKRRYPQSRVTLLDVDAFAVAASRLTLAA- 237
           T   L HL    G   + D GCG GVLG       PQ+ +TL+D    AV ++R    A 
Sbjct: 219 TRAFLPHLPQALGALRVADLGCGNGVLGIVYALGNPQAELTLVDESYMAVQSARENWQAI 278

Query: 238 -NGLEGEVISGDGI-DAAPTELSLILSNPPFHTGVHTNYQASENLLKKSAVHLRKGGEMR 295
                 ++ +GDG+ + AP  L L+L NPPFH         +  +  ++   L KGGE+ 
Sbjct: 279 LGERPADIRAGDGLAEQAPGSLDLVLCNPPFHQQQVVGDFLAWRMFTQAKAALAKGGELW 338

Query: 296 LVANSFLRYQPLIEGALGNCQVRDEADGFRIYQATR 331
           +V N  L Y   ++   GN +       F I +ATR
Sbjct: 339 IVGNRHLGYHLKLKRLFGNAEQVAATPKFVIIKATR 374