Pairwise Alignments

Query, 332 a.a., Ribosomal RNA small subunit methyltransferase C from Pseudomonas putida KT2440

Subject, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

 Score =  196 bits (499), Expect = 5e-55
 Identities = 119/334 (35%), Positives = 180/334 (53%), Gaps = 8/334 (2%)

Query: 5   SEVLLRQAELFQGP-LLIAGAPADDLLGQLPQ----AQAWTWHAGDQAMLESRFAGRSHY 59
           SE+ LRQ + F    +L+AG   D    +L Q       +T H G  + L++      ++
Sbjct: 8   SEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQLKAYPEITRYF 67

Query: 60  GVE-APEAAFDSAVLFLPKSRELAAYLLNALASRLA-GRELYLVGEKRGGIEGAAKQLQA 117
           G +   +   D  +L+ PK+++ A YLL  L ++L  G E+ +VGE R G++   K   A
Sbjct: 68  GEQLTADLNADLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKMFAA 127

Query: 118 FGKPRKLDSARHCQLWQVTIDQAPQAKPLESLAERFELALEDGPLQVVSLPGVFSHGRLD 177
           +G   K DSAR C  +       P A  +E   + + +  +   L + SLPGVFSHG  D
Sbjct: 128 YGPIHKYDSARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLPGVFSHGEFD 187

Query: 178 RGTALLLKHLDGLPGGHMLDFGCGAGVLGATLKRRYPQSRVTLLDVDAFAVAASRLTLAA 237
            G+ LLL  L  L  G ++D G GAGVLG  + +  P   + + D+ A A+ +S+ TL A
Sbjct: 188 LGSRLLLDTLPPL-SGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSSQETLVA 246

Query: 238 NGLEGEVISGDGIDAAPTELSLILSNPPFHTGVHTNYQASENLLKKSAVHLRKGGEMRLV 297
           N L G V   D         + I++NPPFH+G+ T+Y A+E LL +S  HL  GG + +V
Sbjct: 247 NQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASGGSIWVV 306

Query: 298 ANSFLRYQPLIEGALGNCQVRDEADGFRIYQATR 331
           ANSFL+Y P++E A G+C +  + + F IY A +
Sbjct: 307 ANSFLKYPPILEQAFGHCDIAAKTNKFAIYHAKK 340