Pairwise Alignments

Query, 332 a.a., Ribosomal RNA small subunit methyltransferase C from Pseudomonas putida KT2440

Subject, 353 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  170 bits (431), Expect = 4e-47
 Identities = 115/334 (34%), Positives = 178/334 (53%), Gaps = 13/334 (3%)

Query: 5   SEVLLRQAE-LFQGPLLIAGAPADDL------LGQLPQAQAWTWHAGDQAMLESRFAGRS 57
           S+V++R  E L Q  +L+    AD L      +     A A  +H       ++    R 
Sbjct: 17  SQVIIRNQETLSQHKVLVLNHEADLLPKALLDVASSVDALALDYHHYLHLAPQANNKLRC 76

Query: 58  HYGVEAP-EAAFDSAVLFLPKSRELAAYLLNALASRLAGR-ELYLVGEKRGGIEGAAKQL 115
           ++G + P +  +++ +++ PK++ LA YL N  A  L    +L +VGE +GGI+   K L
Sbjct: 77  YFGHQLPHQNKYNTVIVYFPKAKPLAPYLFNLAAQHLVPNGQLLVVGENKGGIKSLVKLL 136

Query: 116 -QAFGKPRKLDSARHCQLWQVT-IDQAPQAKPLESLAERFELALEDGPLQVVSLPGVFSH 173
              F    KLD+ARH  L+  + ID AP+   L   A +++L+   G + + +L GVFS 
Sbjct: 137 PNYFAAGVKLDNARHSLLFGSSLIDTAPEIT-LSDWASQYQLSTPQGNITICNLVGVFSE 195

Query: 174 GRLDRGTALLLKHLDGLPGGHMLDFGCGAGVLGATLKRRYPQSRVTLLDVDAFAVAASRL 233
             LD+GT LLL HL  L  G +LDFGCGAGV+ ATL +  P   +  +D++A A+A+  L
Sbjct: 196 KHLDQGTELLLSHLPTL-SGRVLDFGCGAGVIAATLLKAQPTLSLECIDINAMALASCEL 254

Query: 234 TLAANGLEGEVISGDGIDAAPTELSLILSNPPFHTGVHTNYQASENLLKKSAVHLRKGGE 293
           TLAANG+  +V   DG+     +   I+SNPPFH G+ +    ++  +  SA  L+  G 
Sbjct: 255 TLAANGMMAKVYPSDGLAQTSGKFDGIISNPPFHDGLASTTNIAQRFVADSAKQLQSKGI 314

Query: 294 MRLVANSFLRYQPLIEGALGNCQVRDEADGFRIY 327
            ++VAN  L Y   I    G   V  E + +++Y
Sbjct: 315 WQIVANRHLPYSDTIAAEFGQLTVPAENNKYKLY 348