Pairwise Alignments

Query, 194 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 220 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score = 63.2 bits (152), Expect = 3e-15
 Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 23/194 (11%)

Query: 12  VALAEIGDKTQLLALILAARFRKPWPIIAGIIAATLANHAAAGAVGAWVGSFFSDSALHW 71
           +++AE+GDKT L+A +LA R R+ W ++  ++A  L    +  A+G        ++ + W
Sbjct: 24  ISIAELGDKTFLIAALLAMRHRRRWVLLGTVLALALMTILSV-AIGQLANQLLPETWVRW 82

Query: 72  ILAASFT--ATALW------TLVPDKMDDDENPARRFGP----------FLTTLIAF--- 110
              A F      LW        V D  +++E      G           F   L AF   
Sbjct: 83  AEVAFFAIFGLKLWRDSLGMPQVGDSAEEEEAEELVLGAEAKLGKQVTVFTVVLEAFSLV 142

Query: 111 FLAEIGDKTQVATVMLAAQYPHLIMVIIGTTLGMLIANVPVVLAGNFAADKLPLTLIRRL 170
           F+AE GD+TQ  T+ LAA   +   V +G  LG  I  V  V  G + +  +   ++ ++
Sbjct: 143 FVAEWGDRTQFTTMALAAA-GNAWGVALGAILGHAIVAVIAVNVGRWVSRHISERVLTQI 201

Query: 171 AATAFFVLAIVAVY 184
           +A  F + A +A++
Sbjct: 202 SAGLFLLFAAIALW 215



 Score = 40.0 bits (92), Expect = 3e-08
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 103 FLTTLIAFFLAEIGDKTQVATVMLAAQYPHLIMVIIGTTLGMLIANVPVVLAGNFAADKL 162
           F + LI   +AE+GDKT +   +LA ++     V++GT L + +  +  V  G  A   L
Sbjct: 17  FTSGLIFISIAELGDKTFLIAALLAMRHRRR-WVLLGTVLALALMTILSVAIGQLANQLL 75

Query: 163 PLTLIRRLAATAFFVL 178
           P T + R A  AFF +
Sbjct: 76  PETWV-RWAEVAFFAI 90



 Score = 38.5 bits (88), Expect = 9e-08
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 10  AIVALAEIGDKTQLLALILAARFRKPWPIIAGIIAATLANHAAAGAVGAWVGSFFSDSAL 69
           ++V +AE GD+TQ   + LAA     W +  G I         A  VG WV    S+  L
Sbjct: 140 SLVFVAEWGDRTQFTTMALAAA-GNAWGVALGAILGHAIVAVIAVNVGRWVSRHISERVL 198

Query: 70  HWILAA---SFTATALWTLV 86
             I A     F A ALW +V
Sbjct: 199 TQISAGLFLLFAAIALWGIV 218