Pairwise Alignments

Query, 480 a.a., deoxyribodipyrimidine photolyase from Pseudomonas putida KT2440

Subject, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

 Score =  124 bits (312), Expect = 6e-33
 Identities = 128/492 (26%), Positives = 219/492 (44%), Gaps = 65/492 (13%)

Query: 1   MHLTWLRSDLRIDDNTALSASTERG-PTIALWLVSPGQWQAHDDADCKVDFWLRNLHDLR 59
           ++L WL+ DLR+ D+  L A+   G PT+ L+L  P        ++    F  ++L  + 
Sbjct: 4   INLVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63

Query: 60  QSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGIN-EQRRDDATRAMLE 118
           + L +    +LI T D W         I  ++ +++++ ++E G+    +RD A     +
Sbjct: 64  RDLAQSKGEVLIVTSD-WQTC---FARIAERYAIEAIYSHQEVGLACTFQRDLALAQWCQ 119

Query: 119 KSAIQAHSHLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSL--PALARRVKRQAP 176
           +  I  H         P   + R        +Q +K   EH  + +  P     + R   
Sbjct: 120 QHDIVWHEF-------PYAAVIRG-------AQTRKNWDEHWQQVMRSPCCDPDLTRANW 165

Query: 177 LNIGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYHHLRDLP----- 231
           L + +  +     G     PA    W + +A  Q+  S     T++D+   R        
Sbjct: 166 LKLDAATL-----GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSI 217

Query: 232 -----AKPGTSQLSPYLAAGVISPRQCL-----HGALAGNRGEFDSGSTGVQTWINELLW 281
                A+   S++SPYLA G IS R+       H ++AG R    + S+        L W
Sbjct: 218 SSPSLARHACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSS-------RLHW 270

Query: 282 REFYKHILSGYPQVSRHRAFRAQTEALPWR-DAPA-DLAAWEQGRTGFPIIDAAMRQLLH 339
              +        ++      RA    L    DAPA  LAAW+ G TG P++DA MR L+ 
Sbjct: 271 HCHFIQKFESECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQ 330

Query: 340 TGWMHNRLRMVVAMFLSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSAS-TGTDAVP 398
           TG+++ R+R ++   L+ ++ +DWR G  +  +  +D +   +   +Q  A  TGT+ + 
Sbjct: 331 TGYLNFRMRAMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI- 389

Query: 399 YFRIFNPVSQSQRFDPQGRFIRHWVPELQELDEKAIHQPIKSTDLFG-------NTSYLS 451
             RI+NP  Q+Q  D +G+FI  WVPEL ++    + +P   T L          + YL 
Sbjct: 390 --RIYNPTKQAQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLK 447

Query: 452 PIVDLSSSRQRA 463
           P++DL +S ++A
Sbjct: 448 PVMDLEASAKQA 459