Pairwise Alignments

Query, 480 a.a., deoxyribodipyrimidine photolyase from Pseudomonas putida KT2440

Subject, 475 a.a., deoxyribodipyrimidine photo-lyase (RefSeq) from Shewanella amazonensis SB2B

 Score =  369 bits (946), Expect = e-106
 Identities = 207/475 (43%), Positives = 284/475 (59%), Gaps = 23/475 (4%)

Query: 3   LTWLRSDLRIDDNTALS-----ASTERGPTIALWLVSPGQWQAHDDADCKVDFWLRNLHD 57
           L W R DLR  DN AL+     A+   G   AL++ SPGQWQ HD    +  F L NL+ 
Sbjct: 4   LVWFRQDLRTIDNQALTRACEDANARGGKVHALFIASPGQWQRHDMGVRQQRFLLANLNA 63

Query: 58  LRQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRAML 117
           L + L  + IPL +  +D + Q   A+   C++H + S+    +  I+E+RRD   +A+L
Sbjct: 64  LGEELASMGIPLSLLKVDFFYQTAAALKAFCKEHGISSIFAGAQIEIDERRRD---QALL 120

Query: 118 EKSAIQAHSHLDQLFFRPGTVLTRS-----GDYFQVFSQFKKTCLEHLHRSLPALARRVK 172
           +K         +     PG+V+T+      G  ++VF+ F +       R + A      
Sbjct: 121 DKG-FPLQLTDEHCMLPPGSVVTQGQRDQGGAMYRVFTPFARRW-----REIAASRSLWP 174

Query: 173 RQAPLNIGSDPI--PQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYHHLRDL 230
             AP ++ +  +  P    G     PAL D WP G+  A  +LSRF +  +  Y   RD 
Sbjct: 175 IPAPASVATPVVFTPFAFWGDINDDPAL-DKWPVGQDAALEKLSRFRELGMGRYGENRDF 233

Query: 231 PAKPGTSQLSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILS 290
           PA  GTS LSPYLA GVISPRQCL   L      F + S+  + W+NEL+WREFY+H+L 
Sbjct: 234 PAIDGTSSLSPYLALGVISPRQCLAALLEDFPDVFVNESSPARPWLNELVWREFYRHLLV 293

Query: 291 GYPQVSRHRAFRAQTEALPWRDAPADLAAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMV 350
            +P +S  + F    + + WR+   +  AW+ GRTG+P++DAAMRQL  TGWMHNRLRMV
Sbjct: 294 AFPGLSMAKNFNPLGDGIRWRNDETEFEAWKHGRTGYPLVDAAMRQLNQTGWMHNRLRMV 353

Query: 351 VAMFLSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQ 410
           VA FL+K+LLIDWR GER+F   LIDG LAANNGGWQW+A TG DA PYFRIFNP+SQS+
Sbjct: 354 VASFLTKHLLIDWRWGERYFREQLIDGCLAANNGGWQWAAGTGCDAQPYFRIFNPMSQSE 413

Query: 411 RFDPQGRFIRHWVPELQELDEKAIHQPIKSTDLFGNTSYLSPIVDLSSSRQRALE 465
           +FDP+GRFIR ++PEL +   +++HQ      LF ++ Y SPIV+ + +R RAL+
Sbjct: 414 KFDPEGRFIRKYLPELAQWPTRSLHQ-ASGPGLFDSSGYPSPIVEHTQARVRALD 467