Pairwise Alignments

Query, 573 a.a., conserved hypothetical TPR repeat protein from Pseudomonas putida KT2440

Subject, 287 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 47.0 bits (110), Expect = 1e-09
 Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 45/198 (22%)

Query: 413 QAIQRYPDDLNLLYTRA---MLAEKRNDLTQMEKDLRAIITREPENAMALN--ALGYTLA 467
           QA   Y  DL+  Y      +LA++   L Q ++   A         +A N   +   LA
Sbjct: 24  QAFTPYVPDLDSKYLEEQGLVLAQEAAQLLQFQQIEFAQRQAALATQLAPNDFRVWLVLA 83

Query: 468 DRTTRYTE---AKALIDKAHQLTPDDPAVLDSLGWVNYRLGNLDAAETYLRQAFANFPDH 524
           D + R  +   A A ++KA +L+P +PA+L +LG   +R GN   A ++L++  A  PD 
Sbjct: 84  DASLRLNQLDPAIAALEKAQKLSPREPAILFALGSARFRQGNYSEAASFLQRGLAIKPDS 143

Query: 525 -----------------------------------EVAAHLGEVLWANGKRREARQVWAK 549
                                              E   +LG V +  G R +A   W +
Sbjct: 144 SGALFDLGNVYLIQKQYPPAIAAFQKAVQVKPDFWEAINNLGLVSYEQGDRNQALNYWNR 203

Query: 550 GFEAQADS--PILRKTLL 565
             E   D+  P+L K +L
Sbjct: 204 AIELSKDAAEPVLAKAVL 221



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 372 ASRLLADAREAQP-DYAIQLFLIESESYSNNNKDAQANQVLQQAIQRYPDDLNLLYTRAM 430
           A R  A A +  P D+ + L L ++    N    A A   L++A +  P +  +L+    
Sbjct: 61  AQRQAALATQLAPNDFRVWLVLADASLRLNQLDPAIA--ALEKAQKLSPREPAILFALGS 118

Query: 431 LAEKRNDLTQMEKDLRAIITREPENAMALNALGYTLADRTTRYTEAKALIDKAHQLTPDD 490
              ++ + ++    L+  +  +P+++ AL  LG     +  +Y  A A   KA Q+ PD 
Sbjct: 119 ARFRQGNYSEAASFLQRGLAIKPDSSGALFDLGNVYLIQK-QYPPAIAAFQKAVQVKPDF 177

Query: 491 PAVLDSLGWVNYRLGNLDAAETYLRQA 517
              +++LG V+Y  G+ + A  Y  +A
Sbjct: 178 WEAINNLGLVSYEQGDRNQALNYWNRA 204



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 20/146 (13%)

Query: 82  DPAVSERAYRIAEYLGADEPSLENALVWARNDPQNLDA-----QRAAAIQLARAG----- 131
           DPA++  A   A+ L   EP++  AL  AR    N        QR  AI+   +G     
Sbjct: 93  DPAIA--ALEKAQKLSPREPAILFALGSARFRQGNYSEAASFLQRGLAIKPDSSGALFDL 150

Query: 132 --------RYDESMTYMEKVLQGQGDTHFDFLALSAAETDQSTRDGLLHSFERLLVKYPD 183
                   +Y  ++   +K +Q + D       L     +Q  R+  L+ + R +    D
Sbjct: 151 GNVYLIQKQYPPAIAAFQKAVQVKPDFWEAINNLGLVSYEQGDRNQALNYWNRAIELSKD 210

Query: 184 NGQLIFGKALLLNQDGKTEEALELLE 209
             + +  KA+L+ Q G+TEEA+ L +
Sbjct: 211 AAEPVLAKAVLVYQQGQTEEAVRLAQ 236



 Score = 28.9 bits (63), Expect = 3e-04
 Identities = 51/200 (25%), Positives = 72/200 (36%), Gaps = 12/200 (6%)

Query: 192 ALLLNQDGKTEEALELLESHPAQNGEVAPILLRARLLQALDRGPEALPLLRGAIRDNPDD 251
           +L LNQ      ALE  +    +   +   L  AR  Q      EA   L+  +   PD 
Sbjct: 86  SLRLNQLDPAIAALEKAQKLSPREPAILFALGSARFRQG--NYSEAASFLQRGLAIKPDS 143

Query: 252 KRLRLTYARTLVEQDRIADAKGEFISLVQQYPDDDELRYSLALVCLENKDWDEAEGYLQE 311
                      + Q +   A   F   VQ  PD  E   +L LV  E  D ++A  Y   
Sbjct: 144 SGALFDLGNVYLIQKQYPPAIAAFQKAVQVKPDFWEAINNLGLVSYEQGDRNQALNYWNR 203

Query: 312 LVERDSYVDAAHLNLGR----IHEERHDPAGALREYALVGPGP----DYLPAQLRQADIL 363
            +E     DAA   L +      + + + A  L + AL         D+L  QL    +L
Sbjct: 204 AIELSK--DAAEPVLAKAVLVYQQGQTEEAVRLAQQALGKDSQYVSLDFLKEQLWGDRLL 261

Query: 364 IANGRGTEASRLLADAREAQ 383
               R  +A  L A   EA+
Sbjct: 262 ADTNRLFQAPGLQATLLEAR 281