Pairwise Alignments

Query, 504 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

Subject, 465 a.a., RND efflux system, outer membrane lipoprotein CmeC from Pseudomonas fluorescens FW300-N2E2

 Score =  174 bits (441), Expect = 6e-48
 Identities = 136/473 (28%), Positives = 222/473 (46%), Gaps = 30/473 (6%)

Query: 8   LGLLMVLAGCTQVGPDFEKPQAP----WLDGWSTPMIEQAGRSAAAPDLRQWWAVFADST 63
           L +L +  GC  + P +E+P+AP    WL   STP      +   + D+ +W   F DS 
Sbjct: 9   LAILTLFGGCMNLAPQYERPEAPVSEQWLPAASTP------KGEVSADI-EWQNFFTDSR 61

Query: 64  LDALIAEADANNTNLRVAGLRIAEARAQLAIVQTGRYPQLQ-QLSAQSLYLKQDQSGTPS 122
           L  L + A +NN +LR+A L + +A+AQ  I +    P +   +S          S T S
Sbjct: 62  LARLQSLALSNNRDLRLAVLNVEKAQAQYRIQRAESLPSIDASVSGTHSRTPGSLSNTGS 121

Query: 123 ARDSVFWQSSVGFDIGWEIDFWGRFSRAIESADAVYFASQANYADAMLLLRAQVADTYFA 182
           A  +  + + +G    +E+D +GR     + A   Y +         + L A+VA  +  
Sbjct: 122 AATTHDYSAQLGLS-SYEVDLFGRVQNLQDEALEDYLSLTETRRSTQISLVAEVATAWLT 180

Query: 183 LRTAEARLAIAQENAKRQARSLEITERLFRHGENDELDWQQARTQYLATLATIPEFENQL 242
           L     RL +AQE  + Q  + E+T+R    G +  L   QA+T   +       +E+Q+
Sbjct: 181 LAADNERLHLAQETLRSQQATYELTQRSHALGGSSGLSVAQAQTTVESARVDAAAYESQI 240

Query: 243 NALRNILCSLLGR--PPGPLP--QLEAGHGQLPLPNRAVLQDVPASLLQRRPDIRAAEQA 298
              RN L  L+G   P   LP   LE+    + +P      ++P+SLLQRRPD+ AAE  
Sbjct: 241 LQDRNALRLLVGSDIPEELLPGAYLESAAALVQVP-----AELPSSLLQRRPDVLAAEHT 295

Query: 299 VAAQSALVGVAEADLYPQLSLLGSIGWTFLSANHLPDTFDLAAG-----PSLIWNPFDYG 353
           + + +  +G A A  +P +SL  + G    S++ L   F   +G     PS+    FD G
Sbjct: 296 LKSANIDIGAARAAFFPSISLTANAG---SSSSALSGLFKSGSGAWTFAPSISLPIFDAG 352

Query: 354 RRKNTVRVEDARLQQLIELYQQGVREAAREADDAASGLVRSLQSATIREQASQAAQRSLN 413
             + T+       +  ++ YQQ ++ A +E  DA +      +    ++  + A+++S  
Sbjct: 353 SNRATLDSAKTEREIQVQTYQQTLQSAFKEVADALAERSTLDRRIEAQQALTDASRKSFE 412

Query: 414 LASSQYREGFADFQRVLDAQQLLLQQQDGYLVSRGNAVSSLVTLYKALGGGWD 466
           L+ + YR G   +   LDAQ+ L   Q   +  R    S+ VTLYK +GGGW+
Sbjct: 413 LSDALYRGGSQSYLEALDAQRSLYSAQQDLITLRLTEQSNRVTLYKVMGGGWN 465