Pairwise Alignments

Query, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  471 bits (1212), Expect = e-136
 Identities = 270/723 (37%), Positives = 421/723 (58%), Gaps = 24/723 (3%)

Query: 544  EQVLTRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLN 603
            EQ L R  +GL  R++    ++     A++ L +SE R  +  ++    ++  D  L+ N
Sbjct: 244  EQQLQRAYDGLEQRVVERTAELA---RAAEELGESEARLNLALDASGLGLWDWD--LQHN 298

Query: 604  YVSPS-VQSVLGYQADWIFANGWQSIV-ANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQ 661
             V  S ++ V G   +   A     +   +P  L  +++ +  ++   G+  Q A     
Sbjct: 299  RVHHSRLEVVFGVGLEKRHAEDGSLLPDIHPQDLPIVHATL--IAHLKGESEQFA----- 351

Query: 662  LPTQLFLFDCLRADGRKIPIELR-LVLVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAAT 720
                   +  +RADG +I IE R  V+  D   R   ++G  RDIS  RR  +  R+AAT
Sbjct: 352  -----VEYRAVRADGSEICIEDRGRVIQRDASGRALRMIGTRRDISDVRRQAEQQRLAAT 406

Query: 721  VFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLTVDEQQEGHLRYVVKQ 780
            VFE ++  ++I D    ++  N+A   +SGY   E+L +    +    + +     +   
Sbjct: 407  VFEAASEGMVIMDATYRVLAVNDACCALSGYEREELLGRSIARIAGTPESQRQYEAMRDA 466

Query: 781  LHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRL 840
            L + G W+GE+  KR+ G+ YP WV +  V D +  +   V F +D+S R+  E+R+  L
Sbjct: 467  LERHGHWQGELIEKRKSGEVYPQWVQLREVRDSDDSVTHVVAFISDLSVRRKIEERLRYL 526

Query: 841  AYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLK 900
             +YD LT L NR LF++RL+ A Q+  R    + ++++DLDRFK +N+SLGH A D +L+
Sbjct: 527  THYDDLTGLANRGLFKERLHEACQRVRRNGRNMAVLYIDLDRFKLLNESLGHEAADALLR 586

Query: 901  DMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHVAENILGSLVRPFVLEN 960
            +++ RL   + + DT+AR+ GDEF +LL    +    L+   H+   +L  + +P V++ 
Sbjct: 587  EVSRRLSTTLAEADTIARLSGDEFVVLLDAYGS----LSSLAHLGSRLLQRIRKPMVIDE 642

Query: 961  REFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNFQFYQAEMNASALERLEL 1020
            +E  ++ASIG++L P +  +   L++ A+ AM  AK  G N  QF+     AS++  L+L
Sbjct: 643  QELVISASIGVSLLPDNSRDAEALLRQANIAMQQAKHLGGNTLQFFTDRPQASSMHYLQL 702

Query: 1021 ESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGLV 1080
            E+ LR A+E  +  ++YQP+ S     L  AEAL+RWRHP  GLV P  FIP+ EE GL+
Sbjct: 703  ENQLRKALEVGQLEVFYQPRLSLADDSLEAAEALVRWRHPELGLVAPAQFIPLAEETGLI 762

Query: 1081 VDVGDWVLREASRQLKAWHKAKVRVPKVSVNISARQFSDGQLGTRIANILEESGLPPACL 1140
            + +G++VLREA RQ + W +  +   +VSVN+S +Q   G   + +  +LEE+GLP   L
Sbjct: 763  IPLGEFVLREACRQARQWQQDGLAAIRVSVNLSVKQLRQGNFVSLVRQVLEETGLPATML 822

Query: 1141 ELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFV 1200
            ELELTES L+ +++ A+ I   L+ LG+ +A+DDFGTG+SSL+YLK+FP+D +KIDR+F+
Sbjct: 823  ELELTESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLSYLKRFPVDYVKIDRSFI 882

Query: 1201 DGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMPA 1260
              L    QDA I RAIIAM HSL   V+AEGVET  Q++FL+ + CDE+QGYL   P+PA
Sbjct: 883  SELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANHCDEIQGYLLSPPVPA 942

Query: 1261 HQF 1263
             QF
Sbjct: 943  LQF 945



 Score = 38.5 bits (88), Expect = 3e-06
 Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 30/189 (15%)

Query: 534 DGSWRCYDIREQVLTRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA---ESIS 590
           DGS  C + R +V+ R+A G   R+IG  +D++        +R   ++ R+ A   E+ S
Sbjct: 360 DGSEICIEDRGRVIQRDASGRALRMIGTRRDIS-------DVRRQAEQQRLAATVFEAAS 412

Query: 591 DVIFSTDNQLKLNYVSPSVQSVLGYQADWIFANGWQSIVANP---AQLTGIYSLMERVSK 647
           + +   D   ++  V+ +  ++ GY+ + +       I   P    Q   +   +ER   
Sbjct: 413 EGMVIMDATYRVLAVNDACCALSGYEREELLGRSIARIAGTPESQRQYEAMRDALERHGH 472

Query: 648 AMGDPAQMAQLCSQLPTQLFLFDCLRADGRKIPIELRLVLVWDDDQRFEGVLGVGRDISQ 707
             G+  +                  R  G   P  ++L  V D D     V+    D+S 
Sbjct: 473 WQGELIEK-----------------RKSGEVYPQWVQLREVRDSDDSVTHVVAFISDLSV 515

Query: 708 QRRAEKDLR 716
           +R+ E+ LR
Sbjct: 516 RRKIEERLR 524