Pairwise Alignments

Query, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 929 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Synechococcus elongatus PCC 7942

 Score =  410 bits (1054), Expect = e-118
 Identities = 284/902 (31%), Positives = 457/902 (50%), Gaps = 70/902 (7%)

Query: 379  GMQLIDALIEQ---RPLLELEVRLPTPQGTE------LHLWLMARLPLQRRDYQAVILSI 429
            G+ LID  I+    RP++ L     T QG E      + L     L   + D Q ++ SI
Sbjct: 69   GLDLIDQAIQAGITRPIILL-----TGQGNEQLDASAIELGAADYLVKGQLDCQQLLRSI 123

Query: 430  SDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDRTELA 489
                 R      L E ES +  +    P+ ++V      + +  N+   Q  GY + E  
Sbjct: 124  RYAIDRNLATTRLAESESRYRLLFEANPEPMWVFAKQGLQFLAVNQAASQFFGYSQQEFL 183

Query: 490  QMGDRFWELLLHPEDAAHYQALRRQQRDNCHDQPLHCQLRFRHRDGSWRCYD--IREQVL 547
             M     ++    E     Q       +   D P      +RH+ G     D  I +   
Sbjct: 184  AM--TVLDIQSEEEKTRFLQFFESLICNQIVD-PAVGVWAYRHKQGHLVFADVLIHDFEF 240

Query: 548  TRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSP 607
                  L+  I     D+T +  A +     EQ +R L     D +       ++ Y +P
Sbjct: 241  DNQPCCLILAI-----DITEKQAARELAHQREQAFRKLLNDNRDPLLVISGDRRICYANP 295

Query: 608  SVQSVLGYQADWIFANGWQSIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLF 667
            + Q +L                          +L +  S+++  P         L  +L 
Sbjct: 296  AAQKLLKL------------------------NLEQLESQSLDLPL--------LSDKLT 323

Query: 668  LFDCLRADGRKIPIEL-RLVLVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAATVFEHST 726
             +     DG    +E+ R    W+       +L + RDI++++ +E+ LR+     E S 
Sbjct: 324  EWALTLPDGSVAEVEIHRSETDWEGQPA--DLLSL-RDIAERKASEQQLRLLKESLEASF 380

Query: 727  SAILITD---PAGYIVQANEAFSRVSGYAVSEVLDQLPGMLTVDEQQEGHLRYVVKQLHQ 783
            + ++I D   P   ++  N AF R++GY+ +E+L +   +L  +E+    +  + + L Q
Sbjct: 381  NGVVIVDAIEPDMPVIYVNPAFERITGYSEAEMLGRNCRILQGNERDSLQIEEIHRGLSQ 440

Query: 784  RGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRLAYY 843
              +    +   R+DG  +   + I+ + + +G++  ++    DI+E+K  E+ +   A +
Sbjct: 441  AENVHVVIRNFRKDGQPFWNDLYISPIFNAQGNVTHFIGVQNDITEQKRYEEELSFSASH 500

Query: 844  DALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLKDMA 903
            D LT LPNR + +DRL    + A RQK  + ++F+DLD FK INDS+GH +GD +L ++A
Sbjct: 501  DVLTGLPNRAVLEDRLRQGCKMALRQKHSLAILFIDLDGFKLINDSIGHRSGDLLLVEVA 560

Query: 904  LRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHVAENILGSLVRPFVLENREF 963
             R+   V   DTVAR+GGDEF +LL          N  I +A+ +L S+ RP+ ++    
Sbjct: 561  QRMCEQVRAGDTVARIGGDEFIILLVDLKLE----NDVISIADRLLASVARPYHIQGIYL 616

Query: 964  FVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNFQFYQAEMNASALERLELESD 1023
             VTAS+GI LS  D  + +QL++ AD AMY AK+ G+NN+Q+Y  ++N    ER+ L ++
Sbjct: 617  HVTASMGITLSDGDIEQPTQLIQQADLAMYKAKQEGRNNYQWYTNDLNLRLRERVHLRNE 676

Query: 1024 LRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGLVVDV 1083
            L+ A+E   F LY+QP+  G   ++ G EALLRW+HP  G + P  F+P+ E+ G ++ +
Sbjct: 677  LQKAIETEAFELYFQPKIEGCSGQVIGLEALLRWQHPQMGFISPATFVPIAEDTGQIIPL 736

Query: 1084 GDWVLREASRQLKAWHKAKVRVPKVSVNISARQFSDGQLGTRIANILEESGLPPACLELE 1143
              WVL  A RQL+   +  +  P V+VNIS  QF        + + L++  L    LE+E
Sbjct: 737  SQWVLETACRQLRDLLQQGIAAPSVAVNISTVQFRRINFVKSVQSALQKYQLKSEHLEIE 796

Query: 1144 LTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFVDGL 1203
            +TE++L     +A++ L  LK LG++I++DDFGTG+SSL+YLK+ PID +KIDR+FV  +
Sbjct: 797  ITENVLFDNTEKAIEKLQRLKELGVNISIDDFGTGFSSLSYLKELPIDTVKIDRSFVQEI 856

Query: 1204 PEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMPAHQF 1263
                +DA I + II+MAH L L V+AEGVET +Q +FL++  CD+ QGY F +PMP   F
Sbjct: 857  NTDSRDAAITQGIISMAHHLRLNVVAEGVETEQQFKFLQQSNCDQYQGYYFAKPMP---F 913

Query: 1264 EA 1265
            EA
Sbjct: 914  EA 915



 Score = 42.7 bits (99), Expect = 1e-07
 Identities = 75/283 (26%), Positives = 119/283 (42%), Gaps = 39/283 (13%)

Query: 317 HLRNRAALKHSLALDPNLRRSLLLELKITEVNQVARQLLNIDCHEGAWQRLIDG------ 370
           HL     L H    D N    L+L + ITE  Q AR+L +    E A+++L++       
Sbjct: 227 HLVFADVLIHDFEFD-NQPCCLILAIDITE-KQAARELAHQ--REQAFRKLLNDNRDPLL 282

Query: 371 --TGDSR----DSVGMQLIDALIEQRPLLELEVRLPTPQGTELHLWL----MARLPLQRR 420
             +GD R    +    +L+   +EQ     L++ L + + TE  L L    +A + + R 
Sbjct: 283 VISGDRRICYANPAAQKLLKLNLEQLESQSLDLPLLSDKLTEWALTLPDGSVAEVEIHRS 342

Query: 421 DYQ-----AVILSISDITSRKQVELSL-LERESFWSDVVRTVPDQLYVQDVPSQRMIFSN 474
           +       A +LS+ DI  RK  E  L L +ES  +     V       D+P   +I+ N
Sbjct: 343 ETDWEGQPADLLSLRDIAERKASEQQLRLLKESLEASFNGVVIVDAIEPDMP---VIYVN 399

Query: 475 RHLGQTLGYDRTELAQMGDRFWELLLHPEDAAHYQALRR--QQRDNCHDQPLHCQLRFRH 532
               +  GY   E+     R   L  +  D+   + + R   Q +N     +H  +R   
Sbjct: 400 PAFERITGYSEAEMLGRNCRI--LQGNERDSLQIEEIHRGLSQAEN-----VHVVIRNFR 452

Query: 533 RDGSWRCYDIREQVLTRNAEGLVTRIIGVGKDVTVQIEASQSL 575
           +DG     D+    +  NA+G VT  IGV  D+T Q    + L
Sbjct: 453 KDGQPFWNDLYISPIF-NAQGNVTHFIGVQNDITEQKRYEEEL 494