Pairwise Alignments

Query, 854 a.a., Chaperone protein ClpB from Pseudomonas putida KT2440

Subject, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

 Score =  516 bits (1329), Expect = e-150
 Identities = 310/848 (36%), Positives = 486/848 (57%), Gaps = 32/848 (3%)

Query: 3   IDRLTSKLQLAISDAQSLAVGMDHPAIEPVHLLQALLEQQGGSIKPLLMQVGFDINGLRQ 62
           I +L ++ +LA+  A SL +   HP +   + L  LL+     ++ +L Q G +++ ++Q
Sbjct: 10  IAKLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQ 69

Query: 63  GLVKELDQLPKIQNPTGDVNMSQDLARLLNQADRLAQQKGDQF-ISSELVLLAAM---DE 118
            +     +   +         S  L  LL +A  L+  + +Q  + S  + LAA+   D 
Sbjct: 70  AIASTYSREQVLDTYPA---FSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADR 126

Query: 119 NSKLGKLLLSQGVSKKALENAI-----NNLRGGAAVNDANAEESRQA-----LDKYTVDL 168
                 + L +G++++ L+        ++     A  D NA    QA     L ++  ++
Sbjct: 127 YLSFKLISLFEGINRENLKKHFAMILSDSAETAVAKTDKNAANPLQAAAETPLGRFCTNV 186

Query: 169 TKRAEEGKLDPVIGRDDEIRRTVQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEV 228
           T++A  G+LDPV+ R++E+   V +L RR KNNP+++GE GVGK+A+ EGLA R++ G+V
Sbjct: 187 TEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRVVAGKV 246

Query: 229 PDGLKGKRLLALDMGALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAGK 288
           P  L+   L +LD+G L AGA  +GEFE+RLK +++ + +    IILFIDE HT++G+G 
Sbjct: 247 PTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGSGN 306

Query: 289 GEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEKDAALERRFQKVLVEEPSEEDTIA 348
            EG  DA N+LKPALARGEL  V ATT  EY+++ EKD AL RRFQ V ++EP+ +  + 
Sbjct: 307 QEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQAVD 366

Query: 349 ILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSK 408
           ILRGL   YE  H V ITD A+ AAA+LS RYI+ RQLPDKAID++D A +RI + + + 
Sbjct: 367 ILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAINMTTP 426

Query: 409 PEVLDRLDRRLIQLKVESQALKKEE---DEAAKKRLEKLTEEIERLEREYSDLEEIWASE 465
           P+ L  L+    Q ++E   L++ +    E   +RL+ L  +    E E + L + W  +
Sbjct: 427 PKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALTQSWQQQ 486

Query: 466 KAEVQGSAQIQQKIEQSRQELEAARRKGDLNRMAELQYGVIPDLERSLQMVDQHGKTDNQ 525
           K+ V+    ++ ++     EL  A+ +   + +      V   L+   Q +D     + +
Sbjct: 487 KSLVESIIALRAEL----MELSQAQEQDPDHLLV-----VRTALQEQYQALDAIDHAE-R 536

Query: 526 LLRNKVTEEEIAEVVSKWTGIPVAKMLEGEREKLLKMEELLHQRVIGQSEAVTAVANAVR 585
           L+  +V  ++IAEV++ WTG+PV +M   E  K+  +  +L Q + GQ  A+  +   + 
Sbjct: 537 LMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLL 596

Query: 586 RSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 645
            +RA L  P RP G+FL +GP+GVGKTE    LAE L+  ++ +  I+MSE+ EKH+V+R
Sbjct: 597 TARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTVSR 656

Query: 646 LIGAPPGYVGYEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNVLLQVLEDGRLTDSHGR 705
           LIG+PPGYVGY EGG LTEA+R+ PYSVVLLDEVEKAHP+V N+  Q  + G + D  GR
Sbjct: 657 LIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGR 716

Query: 706 TVDFRNTVIVMTSNLGSAQIQELVGDREAQRAAVMDAVGAHFRPEFINRIDEVVVFEPLG 765
            +D +N V  +TSNLG   I +   +      A+   + A F+P  + R+ EV+ + PLG
Sbjct: 717 VIDCQNIVFFLTSNLGYQTIVDYADEPAKLDEALYPELAAFFKPALLARM-EVIPYLPLG 775

Query: 766 REQIAGITEIQLGRLRSRLLER-ELSLSLSPEALDKLIAVGYDPVYGARPLKRAIQRWIE 824
           +E +A I   +L RL      R    + +    +D++++       GAR L+  I+  + 
Sbjct: 776 KEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRATRSENGARMLEAIIEGQLL 835

Query: 825 NPLAQLIL 832
            P++  +L
Sbjct: 836 PPVSLALL 843