Pairwise Alignments

Query, 320 a.a., 23S rRNA pseudouridine(1911,1915,1917) synthase from Pseudomonas putida KT2440

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  347 bits (889), Expect = e-100
 Identities = 175/315 (55%), Positives = 223/315 (70%), Gaps = 1/315 (0%)

Query: 1   MSEIIQLSAEVPSELGGQRLDQVAAQLFAEYSRSRLTSWIKEGRLTVDGAVV-RPRDLVH 59
           M+  I+L+  V     GQRLDQ  A+LF ++SRSRL  W+ EG++ V+G V+ +PR  V 
Sbjct: 1   MAHQIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVM 60

Query: 60  GGSQLALEAEQEAQGEWIAEDIELDIVYEDDHILVINKPAGLVVHPAAGHASGTLLNALL 119
           GG  + ++AE E +  W A+D+ L+IVYEDD I+VINKP   VVHP AG A  T+LNALL
Sbjct: 61  GGEVITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALL 120

Query: 120 HHVPDIVNVPRAGIVHRLDKDTTGLMVVAKTLQAQTKLVEQMQARKVSRIYECIVIGVVT 179
            H   I  VPRAGIVHRLDKDTTGLMVVAKT+ AQT+LV  +Q R V+R YE IVIG +T
Sbjct: 121 FHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT 180

Query: 180 AGGKIDAPIGRHGGMRQRMAVTDGGKPAVSHYRVLKRFRSHTHVRVKLETGRTHQIRVHM 239
           AGG ID PIGRH   R  M+V+  GK AV+HYRV + FR HT +R++LETGRTHQIRVHM
Sbjct: 181 AGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHM 240

Query: 240 AHVGFPLVGDQTYGGRFRIPPAASPTMVEAVKTFPRQALHARFLALAHPITGEVMKWESP 299
           A++  PL+GD  YGGR RIP  A+  + E ++ F RQALHA  L   HP+TGE +++ +P
Sbjct: 241 AYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAP 300

Query: 300 LPDDFVWLLSLLNQD 314
           +PDD V +   L +D
Sbjct: 301 VPDDMVEMTLALRED 315