Pairwise Alignments

Query, 393 a.a., Bcr/CflA family multidrug resistance transporter from Pseudomonas putida KT2440

Subject, 407 a.a., bicyclomycin resistance protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  172 bits (437), Expect = 1e-47
 Identities = 117/388 (30%), Positives = 195/388 (50%), Gaps = 9/388 (2%)

Query: 5   MVLILGALSAFGPLAIDFYLPAFPAMAQAFATDEKHVQATLAAYFLGLSIGQLAYGPVAD 64
           ++ +L A+ A  PLAID YLPA   +A +F TD   VQ +L+ Y  G ++G L +GP+AD
Sbjct: 21  LIPMLAAIVAITPLAIDMYLPAMATLAHSFNTDIILVQQSLSVYLGGYALGMLCFGPLAD 80

Query: 65  RFGRRKPLMFGVTLFTLASLACAYAPNLDTLVVARFIQALGGCAGMVLSRAIVSDKCDPV 124
           R GRR  ++ G+T F L S     A  ++  +  RF+QA  G A  V+    + +     
Sbjct: 81  RLGRRPMVIMGLTGFMLISFLLGLAEQINVFLGLRFLQAFIGAAATVVVPGYIKEVYGE- 139

Query: 125 ASAKVFSQLMLVMGLAPILAPMLGGVLVNLAGWQSIFLALSLFSAGCLLAVSLGLPESLP 184
            +AK  S + L+M LAP+LAP +G +++ L  W  IF   S ++   LL V + L     
Sbjct: 140 NTAKGMSYVSLIMMLAPLLAPTIGSLILELGDWHLIFFIQSAYTLLLLLLVIILLRMPSD 199

Query: 185 EHIPRQPLSGALRQYLRLLADRVFLGHALTGGIAIAGMFAYIAGSPFVFIKLYGVPAEHY 244
           +    +     L  Y  + +      +  +G +     F Y+  SPFV+++++ +    +
Sbjct: 200 KDKSSRSQKSFLGAYATVFSRPGVKMNIASGVLTSFAFFCYLTASPFVYMEVFSLDKSLF 259

Query: 245 GWLFGTNAAGFILVAQVNARLLAKRGPAFLLGRAVWLYLVAGLVLLGVAALRPAQLWPLL 304
             LF TN    +L   +N R++ + G   +L  + +L  +A   LLGV  L  +  + +L
Sbjct: 260 ALLFSTNVGALMLANIINTRIVGRYGSLRMLHVSTFLGALAAAGLLGVNLLGLSYHFTVL 319

Query: 305 VPLFICIASLGCIIPNASACAMSGQGARAGSASALMGCVQFSVAAGAAALVGLLHDGSAV 364
           + L   + SLG +  NA A  +       G+A+A++G ++F   A A  L+ L ++G+AV
Sbjct: 320 M-LIPLMGSLGIMSVNADAIVLMKFKQETGTATAVIGTLRFGFGALAGPLLALFYNGTAV 378

Query: 365 PMAIVISLCGALVVSVALLTRRLQAKAP 392
           P +       AL+++  LL    Q   P
Sbjct: 379 PFS-------ALMLTAVLLVGFCQFNRP 399