Pairwise Alignments

Query, 445 a.a., MATE efflux family protein from Pseudomonas putida KT2440

Subject, 444 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Pseudomonas fluorescens FW300-N2E2

 Score = 80.5 bits (197), Expect = 1e-19
 Identities = 108/433 (24%), Positives = 177/433 (40%), Gaps = 31/433 (7%)

Query: 19  ALAAPMILSNISVPLVALVDSTVIGHLPHAHQLGAVAVGATLFTFMVGLMGFLRMGSTGF 78
           ALA P++++ ++   +  VD+ + G +     L AVA+G +++  +  LM    + +T  
Sbjct: 3   ALALPIMVAQLATTAMGFVDAVMAGRVG-PRDLAAVALGNSIWVPVFLLMTGTLLATTPK 61

Query: 79  AAQAAGRGDGAALRQVLVQGLLLAVGFALLIGLLALPFSQLALHAMQPSAALQQSTEDFF 138
            AQ  G G  A +  ++ Q L LA+   L I  LAL  ++  LH M     L     ++ 
Sbjct: 62  VAQRFGAGTFAEIGPLVRQALWLALVVGL-IASLALFSAEPILHIMNVDPELIGPCMEYL 120

Query: 139 HTRLLGLPAALASYALVGWFLGTQNARAPLAILLTTNLLNIALNLWFVLG----LDWGVL 194
                GLPA    + L  +  G    R  + + L    LNI LN  F+ G       G +
Sbjct: 121 RGIGTGLPAVALYHVLRCFSDGLGRTRPAMVLGLCGLALNIPLNYIFIYGHLGVPAMGGV 180

Query: 195 GSARASVIAEWSAALLGLALTRPALRAYPGQIVWAAL--KRWQAWRPLLAVNRDIFLRSL 252
           G   A+ I  W  A LG+A       AY    +++     +W   + LL +   I +   
Sbjct: 181 GCGWATAIVMWVMA-LGMAGWARWAPAYQSSRLFSRFDWPQWAVIKRLLGIGLPIGIAVF 239

Query: 253 ALQLVFLLITVQGARLGEATVAANALLLNGLLLTAYALDGLAHAVEALCGHAIGARDRDT 312
           A   +F +I +    LG   VA + + LN   L       L  AV    G A+G      
Sbjct: 240 AESSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGMAVTVRVGQALGRAQ--- 296

Query: 313 LRRSLVVACGWSLITSLGFAGLFLLGGHLFIDLQTDIESVRAAAYPYLPYLALLPLIAVW 372
             R    A G  + T+L +A    L   L   L+  I ++  A    +   ++L + A  
Sbjct: 297 -PREARFAAGVGMGTALAYA---CLSASLMFALRGPIAAIYTADPVVIEVASMLIVYAAL 352

Query: 373 SYLLDGLFIGATRA----REMRNAMLVSVL----IALPVAVAM-------SGLGNHGLWM 417
               D + + A  A    ++ R  M++++     I LPV  A+       +  G  GLW 
Sbjct: 353 FQFSDAIQVTAAGALRGYQDTRVTMILTLFAYWGIGLPVGYALGLTDWLGAASGPSGLWQ 412

Query: 418 AFLGFMGLRAVTL 430
             +  +   A+ L
Sbjct: 413 GLIVGLSCAALML 425