Pairwise Alignments

Query, 445 a.a., MATE efflux family protein from Pseudomonas putida KT2440

Subject, 491 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog from Xanthomonas campestris pv. campestris strain 8004

 Score = 79.3 bits (194), Expect = 2e-19
 Identities = 115/454 (25%), Positives = 187/454 (41%), Gaps = 45/454 (9%)

Query: 12  PTHRKVWALAAPMILSNISVPLVALVDSTVIGHLPHAHQLGAVAVGATLFTFMVGLMGFL 71
           P  + +   A P++  NI+  L   +++  IG       L A A   ++  F++G +  +
Sbjct: 11  PIGKNLLLFALPILAGNIAQSLNGSINAIWIGRYLGEAALTAAANANSIMFFLIGSVFGI 70

Query: 72  RMGSTGFAAQAAGRGDGAALRQVLVQGLLLAVGFALLIGLLALPFSQLALHAMQPSAALQ 131
            M +T    QA G  D A  R+V+        G + LI +     +   L AM    A  
Sbjct: 71  GMAATILIGQAMGARDIAQARKVMGTSATFFGGLSALIAVAGWWLAPHLLAAMGTPPASL 130

Query: 132 QSTEDFFHTRLLGLPAALASYALVGWFLGTQNARAPLAILLTTNLLNIALNLWFVLGL-- 189
              ED+     + +P       L     GT +AR P   LL + +L+I  N   + G+  
Sbjct: 131 ALAEDYLRVIFVAMPTIYLFAFLSAALRGTGDARTPFRFLLLSVVLDIVFNPLLIFGVGP 190

Query: 190 --DWGVLGSARASVIAEWSAALLGLALTRPALRAYPGQIVWAALKRWQAWRPLLAVNRDI 247
               G+ G+A A+V+A+ S AL GL L    LR+  G ++W   +    +R   A+ R +
Sbjct: 191 FPQLGIAGAAWATVLAQ-SVALAGLLL---YLRS-RGHVLWLGRRDLALFRIDPAILRAL 245

Query: 248 FLRS---------LALQLVFLLITVQGARLGEATVAANAL-LLNGLLLTAYALDGLAHAV 297
             +          ++L ++ +L  V G     A     AL L N + + A AL      +
Sbjct: 246 VGKGVPMGLQMVLISLAMIAMLTLVNGFGTDTAAAYGAALQLWNYVQMPAMALGAACSTM 305

Query: 298 EAL-CGHAIGARDRDTLRRSLVVACGWSLITSLGFAGLFLLG-GHLFIDLQTDIESVRAA 355
            A   G  + AR   T R    VA  + L+T L  A L L     L + L +D  ++  A
Sbjct: 306 AAQNVGAGLWARVDATARTG--VAANF-LMTGLLIAPLILFDRWTLALFLPSDSPALEIA 362

Query: 356 AYPYLPYLALLPLIAVWSYLLDGLFIGATRAREMRNAMLVSVLI--------ALPVA-VA 406
            +        L  I++WS+LL G+    +       A++  +LI         +P+A + 
Sbjct: 363 RH--------LNHISIWSFLLFGVTFVVSGVVRATGAVIPPLLILAFALWGVRVPLANLL 414

Query: 407 MSGLGNHGLWMAF----LGFMGLRAVTLGWVGWR 436
           +  LG   +W +F       M L      W GWR
Sbjct: 415 LPHLGADAVWWSFPISSACSMLLSLAYYRWGGWR 448