Pairwise Alignments

Query, 617 a.a., Acetoin catabolism regulatory protein from Pseudomonas putida KT2440

Subject, 640 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  404 bits (1037), Expect = e-117
 Identities = 254/623 (40%), Positives = 350/623 (56%), Gaps = 35/623 (5%)

Query: 21  DRLPQAPVPP--LILDSWRRSMDVYRLDPGSQQGPRILSQSLLNECRERAELFLRIASDA 78
           +  P+  + P  +I  SW RS+  +RLDP S     +L    + + ++R + +L IAS  
Sbjct: 19  EHFPERRIRPDRVIAQSWYRSVIKHRLDPSSSARLDVLCAEDIRQHQQRHQQYLDIASQG 78

Query: 79  VARLHERVRGADYCVLLTDAQGRTIDYRVESAIRNDCRKAGLYLGTCWSEGEEGTCGVAA 138
           V+ L  RV  A + VLL+D  G T+D R+        R +GL +G  W E   GT G+  
Sbjct: 79  VSGLARRVVPAGFAVLLSDEHGITLDARLPDQPVPYVR-SGLVVGARWDESIAGTNGIGT 137

Query: 139 VLTSKAPVTVHKRDHFRAAFIGLTCTAAPVFDPLGELLGVVDVSALQSPDDRRSQHLIRQ 198
            L +  P+ +H+ +HF  +   L+C+ AP+F+  G L G ++ + L S   + SQ+L  Q
Sbjct: 138 TLAAAEPLIIHREEHFLTSNARLSCSVAPIFNAQGLLQGCLNATCLNSNGPKESQYLTLQ 197

Query: 199 LVEQTAREIENAFFMHSAQGHWVMRAHGTPGYVESQPDYLLAWDADGRLQAINSLARQRL 258
           LV   AR IENA F  + +    +         +   + LLA D  GR+   N  A    
Sbjct: 198 LVILYARLIENAHFRQNYRDRLTLSLKPIDEIADLANEQLLALDDSGRVIGANHAAFVAH 257

Query: 259 VERLGRLPEHIGELFD------IDQLRRVSASSAQ-----------------RLPGLGGL 295
            +  G  P  +G   +      +++L R++   A+                 R+P     
Sbjct: 258 DQAHG--PHLLGGPIEQLLPMGVNELLRLTNGGARGLRLRARHDEALLDLSLRIPSSDHR 315

Query: 296 YGRVSAPQQRQRAQPLRQ--AQDTRIEQHLRLATRVKDCNLAVLVLGETGAGKEVFARQL 353
                A  QR R   L Q    D  ++Q +R   +V D ++A+L+ GETG GKE FAR +
Sbjct: 316 LAPAPAKAQRPRHPDLEQLAGDDPTLQQAVRRLHKVIDKDIAILITGETGTGKEAFARAI 375

Query: 354 HQQSQRCDGPFVTLNCAAIPESLIESELFGYVAGAFTGASSKGMQGLLQQADGGTLFLDE 413
           HQ S R D PF+ LNCAAIPESLIESELFGY  G+FTGA  KGM+G L+ A+GGTLFLDE
Sbjct: 376 HQASARRDEPFIALNCAAIPESLIESELFGYRGGSFTGADKKGMKGKLELANGGTLFLDE 435

Query: 414 IGDMPLNLQTRLLRVLAEGEVAPLGAARRERVDIQVICATHRDLAAMVEDGRFREDLYFR 473
           IGDMP +LQTRLLRVLAE E++P+GA     +DIQVICATH+DL  M+ D  FREDL++R
Sbjct: 436 IGDMPAHLQTRLLRVLAEREISPIGAPMPVSLDIQVICATHQDLQGMLRDKHFREDLFYR 495

Query: 474 LANARFELPPLRERDDRLGLIHQLLAEEAAACGVEVVLADDALQALLVYRWPGNLRQLRQ 533
           L      LPPLRER DR  LI +LL  +A A GV+  L   A Q LL   WPGN+RQL  
Sbjct: 496 LNGMNLSLPPLRERSDRAQLIQRLLDSQAEAKGVQ--LTAQARQCLLEASWPGNIRQLIN 553

Query: 534 VLRYACAVSEGGQVRLQDLPQE-VRGEAVG--SAESGVSCPARQLLLDALIRHRWKPADA 590
            LRYA A++E G V +  LP E ++G+A    ++ S  S P    LL+ L RHRW  + A
Sbjct: 554 ALRYAVAMAEDGNVDVDCLPAELLQGDAYARLASPSVGSEPPASNLLEILRRHRWNISAA 613

Query: 591 ARALGISRATLYRRVHEHRIDMP 613
           A  LG++R+TLYR++ + R+  P
Sbjct: 614 AAELGVARSTLYRQMKKQRLVQP 636