Pairwise Alignments

Query, 617 a.a., Acetoin catabolism regulatory protein from Pseudomonas putida KT2440

Subject, 614 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  269 bits (688), Expect = 2e-76
 Identities = 212/622 (34%), Positives = 304/622 (48%), Gaps = 53/622 (8%)

Query: 26  APVPPL-----ILDSWRRSMDVYRLDPGSQQGPRILSQSLLNECRERAELFLRIASDAVA 80
           AP P L     I  SW R    + L+  S      L    + +  E     ++     V 
Sbjct: 3   APAPALSHEAIIQASWSRCR-AFGLNHQSVPAFDQLPAQGIAQLLESQHSLVQTTHQEVL 61

Query: 81  RLHERVRGADYC-VLLTDAQGRTIDYRVESAIRNDCRKAGLYLGTCWSEGEEGTCGVAAV 139
             +E +     C ++L D QG+ +               G   G  W E   GT  +   
Sbjct: 62  PYYENILSNSNCLIMLADNQGQVLTSWGTQRFIEPKLAHGFSAGASWMERCTGTNAIGTA 121

Query: 140 LTSKAPVTVHKRDHFRAAFIGLTCTAAPVFDPLGELLGVVDVSALQSPDDRRSQHLIRQL 199
           L  +  V +   +HF  A   +T +AAP+FD   +++ V+DVS+    D          +
Sbjct: 122 LACEQAVHIEHDEHFLKANRFMTGSAAPIFDAERKVIAVLDVSS----DSYLPPSHTLGM 177

Query: 200 VEQTAREIENAFFMHSAQG-HWVMRAHGTPGYVESQPDYLLAWDADGRLQAINSLARQRL 258
           V+  ++ +EN   ++  +G H+ +  +     ++SQ   LL +D  G++ + N  A   L
Sbjct: 178 VKMMSQTVENRLILNLFRGEHFQLTFNTGLNNLDSQWAGLLIFDESGQVLSANRRADNLL 237

Query: 259 VERLGRLPEHIGELFDIDQLRRVS----------ASSAQRL------PGLGGLYGRV--- 299
              L R+   I  LF +  L  ++          AS + R       P    +  RV   
Sbjct: 238 GLSLSRVS--IESLFKVSLLELLNQPDGLPFALQASGSNRFQCLLRRPSQVSIKARVFTE 295

Query: 300 --SAPQQRQRAQPLRQAQ--DTRIEQHLRLATRVKDCNLAVLVLGETGAGKEVFARQLHQ 355
              AP     A  L      D+R+E+ +R A R+ + ++ +L+ GETG GKEVF + LHQ
Sbjct: 296 TAPAPAPASNAISLNTLHFGDSRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQ 355

Query: 356 QSQRCDGPFVTLNCAAIPESLIESELFGYVAGAFTGASSKGMQGLLQQADGGTLFLDEIG 415
            S RC  PF+ +NCAAIP  L+ESELFGY  GAFTGA+ KG  GL+++AD GTLFLDEIG
Sbjct: 356 ASSRCKQPFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADRGTLFLDEIG 415

Query: 416 DMPLNLQTRLLRVLAEGEVAPLGAARRERVDIQVICATHRDLAAMVEDGRFREDLYFRLA 475
           DMPL  Q RLLRVL E  V P+G+A    VDI++I AT+R L   V+ GRFREDLY+R+ 
Sbjct: 416 DMPLPTQARLLRVLQERCVQPVGSAELFPVDIRIISATNRSLREQVQLGRFREDLYYRIG 475

Query: 476 NARFELPPLRERDDRLGLIHQLLAEEAAACGVEVVLADDALQALLVYRWPGNLRQLRQVL 535
               ELPPLRER D+  L  +L  E          L+ + L     + WPGNLRQ+  VL
Sbjct: 476 GLTLELPPLRERSDKQALFKRLW-EHHREPTQWAGLSREVLDLFERHPWPGNLRQVSSVL 534

Query: 536 RYACAVSEGGQVRLQDLPQ----EVRGEAVGSAESGVSCPARQLLLDALIRHRWKPA--- 588
           + A A++E   +R + LP     ++  E V + E     P    L DA   +R   A   
Sbjct: 535 QVALAMAEEQPIRPEHLPDDFFVDLEMEPVETPE-----PLTVDLNDAEDLNRQLQAVGG 589

Query: 589 ---DAARALGISRATLYRRVHE 607
                AR LG+SR TLY+R+ +
Sbjct: 590 NISHLARRLGVSRNTLYKRLRQ 611