Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 629 a.a., Transcriptional activator of acetoin/glycerol metabolism from Pseudomonas stutzeri RCH2

 Score =  736 bits (1900), Expect = 0.0
 Identities = 389/670 (58%), Positives = 477/670 (71%), Gaps = 46/670 (6%)

Query: 3   SNHFTRHARQVHSVAHGGAGEGG--SDPSIARSWLRCLEDYHLDPAVIEAPVVLEHGRLL 60
           ++  ++HA QV S   G A   G  +DP+IARSW RCLE + LDP    AP V+E  RL 
Sbjct: 2   TSRLSQHAHQVLSFGEGTAASQGPAADPAIARSWRRCLEQHQLDPTSPRAPCVIERPRLN 61

Query: 61  ESRERLHQVLQIADHEMNSLHQQLSGAGHAVLLTDARGVILNCVSAPAERRSFERAGLWL 120
           E R+RL +V+ +A  +MNSLHQQL  +GHAVLLTDA GV+++ V+  AER  F+RAGLWL
Sbjct: 62  EHRDRLDRVIAVAHWQMNSLHQQLGSSGHAVLLTDASGVVIDSVADQAERAEFQRAGLWL 121

Query: 121 GADWSEAREGTNGIGTCLVERQALTIHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVS 180
           GA W+EA EGTNG+G CL+ERQALTI ++EHFRGRH  LTCSASPVFD  G LLAVL+VS
Sbjct: 122 GAVWNEATEGTNGVGLCLLERQALTIRRDEHFRGRHAALTCSASPVFDAEGGLLAVLNVS 181

Query: 181 SARPDVSRQSQFHTMALVNLSAKMIESCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFD 240
           SAR D+SRQ +FHTMAL NLSAK+IESC+FL+H E  +LLRFH Q E +GL SEGLLAFD
Sbjct: 182 SAREDLSRQRRFHTMALTNLSAKLIESCFFLQHCEGDYLLRFHAQPEYIGLLSEGLLAFD 241

Query: 241 GDGRICAANQSALNLLGTVRGGVLGKPLECFFACSHDEMFSRATPGGSAVWPLRTLDGRQ 300
           GDGRI   N++ALNLL + R  +LG+PLE       +++  RA P     WPL T DG++
Sbjct: 242 GDGRITTINETALNLLASGREALLGQPLETILDVRLEQLLQRARPQPGTCWPLHTHDGQR 301

Query: 301 VFASLRGQARAPVWSVPAAQPRPAGEVEPLVCLLDPALQNDFRRSVRVFERDVPLLLRGE 360
           ++  LRG    P   V  A P+ A      +CLLDP+++ DF R+++V ERDVP+LL+GE
Sbjct: 302 LYCQLRG----PQMRVVVAPPKEAAAQVGGLCLLDPSMRTDFSRALKVLERDVPVLLQGE 357

Query: 361 TGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESELFGYRGGSFTGARKEGMRGKL 420
           TG GKEAFA A+H+AS R G+PFVA+NCA+IPE+LIESELFGYRGGSFTGAR+EGM GKL
Sbjct: 358 TGTGKEAFASALHRASSRAGRPFVALNCAAIPETLIESELFGYRGGSFTGARREGMVGKL 417

Query: 421 LQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIG-GEPQAVDVRIVSATHRDLLERV 479
            QA+GG L LDEIGDMPLALQTRLLRVLEER+V P+G   P  +++R++SA+H DL   V
Sbjct: 418 EQANGGILFLDEIGDMPLALQTRLLRVLEERKVTPLGAAAPAELNIRLISASHHDLRALV 477

Query: 480 EQGSFREDLYYRLNGLEVALPAVRERSDKAQLLDFLLRQETQGQWIDIEPRARQALLAFN 539
             G+FREDLYYRL GL VALP +RERSDKA+LLD LL +E QG+ I ++P ARQALLA+ 
Sbjct: 478 AGGAFREDLYYRLGGLMVALPPLRERSDKAELLDHLLAEEAQGESISLDPAARQALLAYR 537

Query: 540 WPGNVRQMRNVLRTLVALCEDARITFADLPAVIRTSPPLAGVGEPAKMSDQEMEGEGVAL 599
           WPGNVRQMRN+LRTLVAL E  RI   ++ AV+      A +GE   M D          
Sbjct: 538 WPGNVRQMRNLLRTLVALSEQGRIAVDEVLAVLP-----AEIGEADAMRDP--------- 583

Query: 600 VRGQARSHRSGGAAEIEGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLY 659
                                    L  AER+AL  VL  +HW ++RVAE LGISRNTLY
Sbjct: 584 -------------------------LQSAEREALLSVLRERHWQVSRVAEELGISRNTLY 618

Query: 660 RKLRKHGITR 669
           RKLRKHGI+R
Sbjct: 619 RKLRKHGISR 628