Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 466 a.a., nitrogen regulation protein NR(I) from Vibrio cholerae E7946 ATCC 55056

 Score =  211 bits (538), Expect = 5e-59
 Identities = 132/334 (39%), Positives = 190/334 (56%), Gaps = 20/334 (5%)

Query: 336 PALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESL 395
           PA+Q  FR   R+    + +L+ GE+G GKE  A A+H+ S R  KPF+A+N A+IP+ L
Sbjct: 146 PAMQEVFRAIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAQKPFIALNMAAIPKDL 205

Query: 396 IESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVP 455
           IESELFG+  G+FTGA     +G+  QA+GGTL LDEIGDMPL +QTRLLRVL + Q   
Sbjct: 206 IESELFGHEKGAFTGANTV-RQGRFEQANGGTLFLDEIGDMPLDIQTRLLRVLADGQFYR 264

Query: 456 IGGEPQ-AVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLLD- 513
           +GG     VDVRIV+ATH++L + V QG FREDL++RLN + + +P++RER    + L  
Sbjct: 265 VGGHVAIKVDVRIVAATHQNLEKLVHQGKFREDLFHRLNVIRIHIPSLRERRQDIEKLTK 324

Query: 514 ---FLLRQETQGQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPA 570
               L  +E   +   + PR    L   +WPGNVRQ+ N+ R L  +   + +  +DLP+
Sbjct: 325 HFLALAAKELGVEMKTLNPRTVDILTKLDWPGNVRQLENMCRWLTVMASGSEVLPSDLPS 384

Query: 571 VIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTEVLLDAER 630
            + +           K S  + +      +   A+S  + G  E+   +     L + ER
Sbjct: 385 ELLSE---------RKASHFDNDISWQKQLETWAKSALASGETELLAYA-----LPEFER 430

Query: 631 QALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRK 664
             L+  L   + H    A+ LG  RNTL RKL++
Sbjct: 431 ILLEAALHHTNGHKQEAAKVLGWGRNTLTRKLKE 464