Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  208 bits (529), Expect = 5e-58
 Identities = 130/337 (38%), Positives = 190/337 (56%), Gaps = 15/337 (4%)

Query: 347 RVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESELFGYRGG 406
           +V   +  +L+ GE+G GKE  A+ +H  S RR  PFV INC +IP  L+ESELFG+  G
Sbjct: 153 QVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKG 212

Query: 407 SFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIGGEPQ-AVDV 465
           +FTGA     +G+   A+GGTL LDEIGDMP+++Q +LLRVL+ER    +GG      +V
Sbjct: 213 AFTGA-ITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANV 271

Query: 466 RIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLL--DFLLRQETQG- 522
           R+++ATHR+L E ++   FREDLYYRLN   + +PA+R+R D   LL  + + R E +G 
Sbjct: 272 RVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGA 331

Query: 523 QWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPAVIRTSPPLAGVG 582
           Q I   PRA  +++  +WPGNVR++ N++  +V L  ++ +    LP   R S       
Sbjct: 332 QPICFTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQP 391

Query: 583 EPAKMSDQE------MEG---EGVALVRGQARSHRSGGAAEIEGESAG-TEVLLDAERQA 632
           EP++ S  E      +EG   E       Q           +  E     E+L D E   
Sbjct: 392 EPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNL 451

Query: 633 LKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKHGITR 669
           + + LEA+   + R A+ LG+ R TL  K+RK+ + R
Sbjct: 452 INQALEAQGGVVARAADMLGMRRTTLVEKMRKYNMQR 488