Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 513 a.a., sigma-54-dependent transcription regulator protein from Sinorhizobium meliloti 1021

 Score =  221 bits (563), Expect = 6e-62
 Identities = 133/356 (37%), Positives = 200/356 (56%), Gaps = 26/356 (7%)

Query: 336 PALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESL 395
           PA+      + R  + ++P++L GE+G GKE  A+A+  AS+R  KPFV +NC +IP +L
Sbjct: 150 PAMIRVIDLARRAAQSNIPIVLEGESGVGKEMVARAIQAASDRAAKPFVTVNCGAIPHNL 209

Query: 396 IESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVP 455
           +ES LFG+  G+FTGA  E   GK + ADGGTL LDEIGD+PL +Q +LLR +++ ++  
Sbjct: 210 VESILFGHEKGAFTGA-SEKHSGKFVDADGGTLFLDEIGDLPLDVQVKLLRAVQQGEIET 268

Query: 456 IGG-EPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLL-- 512
           IG  +PQ V+VR++SAT++DL+  V +G FREDLYYRLN   + +PA+R R +   +L  
Sbjct: 269 IGARQPQKVNVRLISATNKDLITEVREGRFREDLYYRLNVFPITIPALRRRKEDIPVLVR 328

Query: 513 ---DFLLRQETQGQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLP 569
              +    ++   Q + +   A   L +++WPGN+RQ+ N +   V L +   +T  D P
Sbjct: 329 AFVERFSAEQRLDQRLTVSSGAMALLTSYDWPGNIRQLENAIFRAVVLADGHELTVRDFP 388

Query: 570 AVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAE--------------- 614
            V  T  P   V + + +S  E   E        A +    GA E               
Sbjct: 389 QV-ATQIPGYIVADRSGLSWGEAGPERRPASGQLAAAQADAGAREQPAHSEQTPEGRLEN 447

Query: 615 -IEGESAGTEV--LLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKHGI 667
            I   S G EV  L + E + ++  L+     +++VA  LGI R+TLYRKL+ +GI
Sbjct: 448 AIASLSEGGEVRKLAEVEEELIRFALKFYRGQMSQVARKLGIGRSTLYRKLKDYGI 503