Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 453 a.a., response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Dechlorosoma suillum PS

 Score =  221 bits (563), Expect = 6e-62
 Identities = 158/394 (40%), Positives = 209/394 (53%), Gaps = 57/394 (14%)

Query: 283 ATPGGSAVWPLRTLDGRQVFASLRGQARAPVWSVPAAQPRPAGEVEPLVCLL---DPALQ 339
           AT  G   +  +  DG+ +   +    R    + PA Q    GE EP    L    PA+Q
Sbjct: 91  ATRRGVFGFLTKPFDGKALLEQVEQALRL---ASPAGQG--GGENEPWRADLVGGSPAMQ 145

Query: 340 NDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESE 399
               R+  V   D  + + G +G GKE  A+A+H AS R  KPFVAINCA+IPE+L+ESE
Sbjct: 146 ELLERARLVAASDASVFIAGASGTGKELLARAIHLASPRADKPFVAINCAAIPENLLESE 205

Query: 400 LFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIGG- 458
           LFG+R G+FTGA     +G  L+ADGGT+ LDEIGDMPL+LQ +LLRVL+ERQV P+G  
Sbjct: 206 LFGHRKGAFTGA-TYNHKGLFLEADGGTVFLDEIGDMPLSLQAKLLRVLQERQVRPVGAT 264

Query: 459 EPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLLDFLLRQ 518
           +   VDVR+VSATHRDL E ++ G FREDLYYRLN + +ALP + ER +   LL     Q
Sbjct: 265 QAVPVDVRVVSATHRDLDELLKSGQFREDLYYRLNVVSLALPLLAERREDIPLLANHFLQ 324

Query: 519 ETQGQW----IDIEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPAVIRT 574
            T  ++        P A +AL+   WPGNVRQ++NV+   VAL                 
Sbjct: 325 RTASRYGKPVTAFAPDAMEALVTAPWPGNVRQLQNVVEQAVAL----------------- 367

Query: 575 SPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGT---EVLLDAERQ 631
             P++G   PA            AL++G  RS          G+SA T   E     ER 
Sbjct: 368 -SPVSGGLVPA------------ALIQGALRS----------GDSAFTSLDEAKKVFERD 404

Query: 632 ALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKH 665
            L  +L      +T+ A     +R   Y+ L +H
Sbjct: 405 YLVRLLRLTEGSVTQAARLAQRNRTEFYKLLERH 438