Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

 Score =  313 bits (803), Expect = 1e-89
 Identities = 227/653 (34%), Positives = 335/653 (51%), Gaps = 55/653 (8%)

Query: 30  IARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERLHQVLQIADHEMNSLHQQ-LSGAG 88
           IA SW RC+  + LD     AP+  E  RL E   +  ++L + + E+   ++  LS + 
Sbjct: 13  IADSWNRCIA-WGLDHDHEPAPLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLSNSR 71

Query: 89  HAVLLTDARGVILNCVSAPAERRSFERAGLWL--GADWSEAREGTNGIGTCLVERQALTI 146
             +LL D    +L+  S   ER +  R   W   GA+W E   GTN IGT +     + I
Sbjct: 72  CLILLADQHATVLS--SWGDERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQI 129

Query: 147 HQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIE 206
            +NEHF   +  +  SA+P+FD H  +  VL V S     +   Q HT+ +V L ++ +E
Sbjct: 130 QRNEHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSD----AYLPQAHTLGMVRLLSQSVE 185

Query: 207 SCYFLRHF-EQQWLLRFHLQAESVGLFSEGLLAFDGDGRICAANQSALNLLGTVRGGVLG 265
           +    R F    + +  +  A++      G+L  D  G++ A+NQ A  LLG      + 
Sbjct: 186 NRLINRQFGPDHFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGM---NTVE 242

Query: 266 KPLECFFACSHDEMFSRATPGGSAVWPLRTLDGRQVFASLRGQARAPVWSVPAAQPRPAG 325
             L+  F    + +        +    L T    ++ A ++   R P  +    +P P  
Sbjct: 243 ARLDELFTRHRNHILGHPE---TETLQLTTRSKVRLSARIKRPTRIPDAN-GKTKPSPVP 298

Query: 326 E-----VEPL----VCLLDPALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQAS 376
           E       PL    +   D A++    +S++V ER +P+L+ GETG GKE   +A+H+AS
Sbjct: 299 EDLRQSARPLDIDNLDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVKALHRAS 358

Query: 377 ERRGKPFVAINCASIPESLIESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDM 436
            R+ +P VA+NCA+IP  L+ESELFGY  G+FTGAR +G  G + +A  G L LDEIG+M
Sbjct: 359 HRKDQPLVAVNCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFLDEIGEM 418

Query: 437 PLALQTRLLRVLEERQVVPIGG-EPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGL 495
           PL+ Q+RLLRVL+ER V P+G  +   VD+ +V+AT+R L  R+E G FR DLYYR+NGL
Sbjct: 419 PLSAQSRLLRVLQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLYYRINGL 478

Query: 496 EVALPAVRERSDKAQLLDFL-LRQETQGQWIDIEPRARQALLAFNWPGNVRQMRNVLRTL 554
            V LPA+R R+D+  L+  L  R    GQ   + P+   AL A  WPGN+RQ+ NVLR  
Sbjct: 479 CVELPALRNRADRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWPGNIRQLVNVLRVA 538

Query: 555 VALCEDARITFADLPAVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAE 614
           +A+ +  ++    LP              P + SD  M+ + VA           G  AE
Sbjct: 539 IAIADGEQVQVWHLPEDFLAE----FEANPLEQSDPPMQEQPVA-----------GSEAE 583

Query: 615 IEGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKHGI 667
            E   A T   L   R+    + +A        A  L ISRNTLY++LR+ G+
Sbjct: 584 TEDTLART---LQIYRKCTGNISQA--------ARELSISRNTLYKRLREMGV 625