Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 627 a.a., sigma-54-dependent Fis family transcriptional regulator from Klebsiella michiganensis M5al

 Score =  209 bits (532), Expect = 3e-58
 Identities = 126/335 (37%), Positives = 191/335 (57%), Gaps = 31/335 (9%)

Query: 336 PALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESL 395
           PA+ +  +++      ++P+ + G+TG GKE FAQ++H  S R   PF+AINCA+IPE +
Sbjct: 321 PAILDVIKKAKLCARHELPIHILGDTGTGKELFAQSIHNHSARSHSPFIAINCAAIPEGI 380

Query: 396 IESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVP 455
           +ESELFGY  G+FT ARK G  G    A  GT+ +DEI + PL++Q +LLRVL+E+Q   
Sbjct: 381 LESELFGYADGAFTSARKGGKPGVFEMAMNGTVFIDEISEAPLSVQVKLLRVLQEKQFSR 440

Query: 456 IGGEPQ-AVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRER-SDKAQLLD 513
           +GG+     D R+++A+++DL   V  G FR+DLYYR+N LE++LPA+ +R  D   L+ 
Sbjct: 441 LGGDTLITADFRLITASNKDLRPLVASGEFRQDLYYRINILELSLPALCQRPGDIMPLIQ 500

Query: 514 FLLRQETQGQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPAVIR 573
            LL Q  QG+ I   P A   L  + WPGN+R+++ V+  L+ L +  R++   L  V +
Sbjct: 501 HLLHQ--QGKQITFTPDAVDFLHGYRWPGNIRELQAVIYRLIVLVDIDRVSKEILLQVSQ 558

Query: 574 TSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTEVLLDAERQAL 633
            SP            D + EG           SH           S  T++L   E++ +
Sbjct: 559 ISP------------DDDNEG-----------SHLPATGV----TSDETDLLKKQEKRLI 591

Query: 634 KEVLEAKHWHLTRVAEHLGISRNTLYRKLRKHGIT 668
             V+E      T+ +  LGIS  TL+RKL++H I+
Sbjct: 592 THVIEKTDGDRTKASVMLGISPTTLWRKLKQHNIS 626