Pairwise Alignments

Query, 265 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 261 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score =  134 bits (336), Expect = 3e-36
 Identities = 86/261 (32%), Positives = 135/261 (51%), Gaps = 28/261 (10%)

Query: 1   MDIAMEMLGSYWAEHWLLAVLILGAIAFVAGFVDSIAGGGGLFLVPGFLLVGMPPQVALG 60
           M++++E+LG            +L  +A VAGF+D++AGGGGL  +P  L  G+PP  AL 
Sbjct: 1   MELSLEVLG------------LLFLVAGVAGFIDAMAGGGGLLTLPALLAAGVPPTQALA 48

Query: 61  QEKLVSTLGTLAAIRNFLANSKMVWQVALVGVPFSLLGAYLGAHLIVSISQETVGKII-L 119
             KL S+ G+ +A   F+    +  +   + +  + +GA LGA  +  I    +  +I L
Sbjct: 49  TNKLQSSFGSFSATLYFVRKGVVSLKAMRLAIACTFVGAALGAEAVQYIDATLLTSLIPL 108

Query: 120 ALIPLGILIFLTPKDR------PVEERELSSRMLFTVVPLTCLAIGFYDGFFGPGTGSMF 173
            L+ + +   L P  +      P+ E   +    FTV       IGFYDGFFGPGTGS+F
Sbjct: 109 LLLGISLYFLLAPTTKTHTGPAPLSETAFA----FTVG----FGIGFYDGFFGPGTGSIF 160

Query: 174 IIAFHYLLRMDLVSSSANSKTFNFASNIGALVAFVSAGKVVYLLALPLVACNILGNHLGS 233
            + F  L    LV ++A +K  NF SNI AL  F+ AG  ++ + L +     +G  +G+
Sbjct: 161 TVCFVALGHFSLVEATARTKVLNFTSNIAALTFFLIAGLPIWEIGLTMAVGGFIGARMGA 220

Query: 234 SLALRKGNDVVRKALV-FSML 253
            + + KG   +R  ++  SML
Sbjct: 221 KVVISKGQRWIRPLVITMSML 241



 Score = 38.9 bits (89), Expect = 1e-07
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 26  IAFVAGFVDSIAGGG-GLFLVPGFLLVGMPPQV-ALGQEKLVSTLGTLAAIRNFLANSKM 83
           + F  GF D   G G G      F+ +G    V A  + K+++    +AA+  FL     
Sbjct: 141 VGFGIGFYDGFFGPGTGSIFTVCFVALGHFSLVEATARTKVLNFTSNIAALTFFLIAGLP 200

Query: 84  VWQVALVGVPFSLLGAYLGAHLIVSISQETVGKIILALIPLGILIFL 130
           +W++ L       +GA +GA +++S  Q  +  +++ +  L  L  L
Sbjct: 201 IWEIGLTMAVGGFIGARMGAKVVISKGQRWIRPLVITMSMLMALKLL 247