Pairwise Alignments
Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440
Subject, 1100 a.a., DNA-directed RNA polymerase subunit beta from Synechococcus elongatus PCC 7942
Score = 669 bits (1726), Expect = 0.0
Identities = 342/603 (56%), Positives = 444/603 (73%), Gaps = 12/603 (1%)
Query: 366 EALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIEGSGVL 425
EAL+E+YR +RPGEPPT + L + FF +RYDL VGR K N+++G + L
Sbjct: 220 EALMELYRKLRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLGLNVADTVRTL 279
Query: 426 SKEDIVEVLKTLVDIRNGKG--IVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKER 483
+ EDI+ + L+++ G VDDIDHLGNRRVR VGE+ +NQ RVGL R+ER ++ER
Sbjct: 280 TSEDILAAIDYLINLELDLGGCEVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRER 339
Query: 484 LSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGL 543
+++++S+ L P L+N KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGL
Sbjct: 340 MTVSDSDSLSPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGL 399
Query: 544 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEGV 603
TRERAGF VRD+HP+HYGR+CPIETPEGPN GLI SLA +AR N YGF+E+P+ V+EG
Sbjct: 400 TRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNDYGFIETPFWRVEEGR 459
Query: 604 VSDDI--VFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDVS 661
V D+ V+++A +E D +A A +D ++ + VR+ +FT PE V + +S
Sbjct: 460 VRKDLAPVYMTADQEDDLRVAPGDVATDDAGYILGTTIPVRYRQDFTTTTPERVDYVALS 519
Query: 662 PKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCV 721
P Q++SVA SLIPFLEHDDANRALMGSNMQRQAVP LR ++PLVGTG+E ARDSG+ +
Sbjct: 520 PVQIISVATSLIPFLEHDDANRALMGSNMQRQAVPLLRPERPLVGTGLEPQAARDSGMVI 579
Query: 722 VARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDK 781
+ G I VDA+ I V +TGE Y L KY RSNQ+TC+NQRP+V +GD+
Sbjct: 580 TSPVDGTISYVDATHIEVTA-----DTGEKYG--YALQKYQRSNQDTCLNQRPIVFEGDR 632
Query: 782 VQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQEL 841
VQRG ++ADG +T+ GELALGQN+ +A+M W G+N+ED+I +SER+V +D +T+IHI++
Sbjct: 633 VQRGQVIADGSATEKGELALGQNILVAYMPWEGYNYEDAILISERLVYDDVYTSIHIEKF 692
Query: 842 TCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQLT 901
AR TKLGPEEIT +IPNVGE AL +LDE GI+ VGA V +GDILVGKVTPKGE+
Sbjct: 693 EIEARQTKLGPEEITREIPNVGEDALRQLDENGIIRVGAWVESGDILVGKVTPKGESDQP 752
Query: 902 PEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRD-GVERDSRALAIEKMQLDE 960
PEEKLLRAIFGEKA DV+D SLRVP G KG V+DV++FTR+ G E A + ++ + +
Sbjct: 753 PEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRLFTREQGDELPPGANMVVRVYVAQ 812
Query: 961 IRK 963
RK
Sbjct: 813 KRK 815
Score = 293 bits (751), Expect = 5e-83
Identities = 202/516 (39%), Positives = 279/516 (54%), Gaps = 74/516 (14%)
Query: 854 EITADIPNVGEAALNK---------LDEAGIVYVGAEVGAGDILV-GKVTPKGETQLTPE 903
E+TAD AL K L++ IV+ G V G ++ G T KGE L
Sbjct: 596 EVTADTGEKYGYALQKYQRSNQDTCLNQRPIVFEGDRVQRGQVIADGSATEKGELALG-- 653
Query: 904 EKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDEIRK 963
+ +L A + + +D L ++ V D V+T ++ IEK +++ +
Sbjct: 654 QNILVAYMPWEGYNYEDAILI----SERLVYD-DVYT---------SIHIEKFEIEARQT 699
Query: 964 DLNEE--FRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHGQWFKLRMAE 1021
L E R + + LR ++ GA ++ G ++ +V E Q + ++
Sbjct: 700 KLGPEEITREIPNVGEDALRQLDENGIIRVGAWVESGDILVGKVTPKGESDQPPEEKLLR 759
Query: 1022 DALNEQLEKAQQYIV-----DRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRR 1076
E+ + + ++ R++D + + +QGD+L PG +V+VY+A +R+
Sbjct: 760 AIFGEKARDVRDNSLRVPNGEKGRVVDVRLFTR----EQGDELPPGANMVVRVYVAQKRK 815
Query: 1077 IQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGL 1136
IQ GDKMAGRHGNKG++S I+P EDMP+ +GTP+D+VLNPLGVPSRMNVGQ+ E LG
Sbjct: 816 IQVGDKMAGRHGNKGIISRILPCEDMPYLPDGTPLDIVLNPLGVPSRMNVGQVFECMLGW 875
Query: 1137 AAKGLGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLKKGVP 1196
A + +L+ + K DE E L N K
Sbjct: 876 AGQ--------LLDARFKVTPF------------------DEMYGAEASRLTVNAKL--- 906
Query: 1197 MATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDD 1256
++ RE + E G++ ++DGRTG F+RPVTVG YMLKL HLVDD
Sbjct: 907 --------SEAREQTGQPWVFSDDEPGKIQVYDGRTGEPFDRPVTVGRAYMLKLVHLVDD 958
Query: 1257 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1316
K+HARSTG YSLVTQQPLGGKAQ GGQRFGEMEVWALEAYGAAY LQE+LTVKSDD+ GR
Sbjct: 959 KIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSDDMQGR 1018
Query: 1317 TKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDI 1352
+ IV G PG PESF VL++E++SL +DI
Sbjct: 1019 NEALNAIVKGKAIPRPGTPESFKVLMRELQSLCLDI 1054
Score = 161 bits (408), Expect = 3e-43
Identities = 92/208 (44%), Positives = 130/208 (62%), Gaps = 22/208 (10%)
Query: 19 PDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSVFPIISYSGNAALEYVG-- 76
P +P L+AIQ +S+R FL+ G ++ +S PI Y+G L ++G
Sbjct: 9 PAAFHLPDLVAIQRNSFRWFLEEGLIEE----------LESFSPITDYTGKLELHFLGKQ 58
Query: 77 YRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKDIKEQEVYMGEIPLMTE 136
Y+L P +DV E R T++V + V RLI NK +IKEQEV++G++PLMT+
Sbjct: 59 YKLKRPKYDVDEAKRRDGTYSVQMYVPTRLI-------NKETGEIKEQEVFIGDLPLMTD 111
Query: 137 NGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKD 196
GTF+ING ERVIV+Q+ RSPGV++ +R K +G+L ++A +IP RG+WL FE D
Sbjct: 112 RGTFIINGAERVIVNQIVRSPGVYYKSERDK---NGRLTHNASLIPNRGAWLKFETDKNG 168
Query: 197 CVFVRIDRRRKLPASVLLRALGYSTEEV 224
V+VRID+ RKL A VLL+ALG S E+
Sbjct: 169 LVWVRIDKTRKLSAQVLLKALGLSDNEI 196