Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440

Subject, 1393 a.a., DNA-directed RNA polymerase, beta subunit (NCBI) from Rhodospirillum rubrum S1H

 Score = 1619 bits (4193), Expect = 0.0
 Identities = 818/1390 (58%), Positives = 1053/1390 (75%), Gaps = 38/1390 (2%)

Query: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV 60
            M  S T +KRIRKDF ++P V  +P L+ +Q  SY +FLQ G   D   D GL   FKSV
Sbjct: 1    MTKSLTSRKRIRKDFGRIPTVAPMPNLIEVQKSSYDQFLQIGVPVDKRTDSGLQEVFKSV 60

Query: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFD--KESSNKAI 118
            FPI  +SG   LE+V Y L EP +D  EC  RG+TFA PL+V +RL+++D  +E+  ++I
Sbjct: 61   FPIRDFSGKGELEFVAYELEEPKYDTDECQQRGMTFAAPLKVTLRLLVWDVDEETGARSI 120

Query: 119  KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178
            +DIKEQ+VYMG++PLMT NGTF+INGTERVIVSQ+HRSPGVFFDHD+GKTHSSGK L++A
Sbjct: 121  RDIKEQDVYMGDMPLMTSNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAA 180

Query: 179  RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRAL--------------------- 217
            R+IPYRGSWLDFEFD KD V+VRIDRRRKLP + LL AL                     
Sbjct: 181  RVIPYRGSWLDFEFDAKDMVYVRIDRRRKLPVTTLLYALEGAAATALREARTAEGRSVDP 240

Query: 218  ----GYSTEEVLNTFYTTNVFHISGEKLSLELVPQRLRGEVAVMDIHDE-TGKVIVEQGR 272
                G ++EE+L+ FY    +    +   ++  P  LRG   + D+ D  TG+V +E G 
Sbjct: 241  SEIAGMTSEEILDFFYQKLSYKRDDKGWKVDFKPDHLRGVKLMFDLVDAATGEVKIEAGT 300

Query: 273  RITARHINQLEKAGVKQLDVPMEYVLGRTTAKAIVHPATGEILAECNTEMTTELLIKVAK 332
            ++T R   +L + G+ ++ V  E ++GR  A+ +++ A+GEI AE   E+T  +L  + K
Sbjct: 301  KVTPRAARKLAEDGMTEMRVFTEELVGRYAAEDMINEASGEIYAEAGEELTEAMLADMEK 360

Query: 333  AQVVRIETLYTNDIDCGPFISDTLKIDTTSNQLEALVEIYRMMRPGEPPTKDAAETLFNN 392
            A    +  L+ + ++ GP++ +TL +D  + + EAL++IYR+MRPGEPPT + A+ LF  
Sbjct: 361  AGFTELRVLHIDHVNVGPYVRNTLAMDKNTTREEALIDIYRVMRPGEPPTLETADALFKG 420

Query: 393  LFFSAERYDLSAVGRMKFNRRIGRTEIEGSG---VLSKEDIVEVLKTLVDIRNGKGIVDD 449
            LFF +ERYDLSAVGR+K N R+G T  E      VL KED++ +++ LV++++GKG +DD
Sbjct: 421  LFFDSERYDLSAVGRVKMNARLGFTMQEAPDTMRVLRKEDVLHIIRQLVELKDGKGEIDD 480

Query: 450  IDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKE 509
            IDHLGNRRVR VGE+ ENQ+RVGL+R+ERA++ER+S  + + +MP DLINAKP AAAV+E
Sbjct: 481  IDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDTVMPHDLINAKPAAAAVRE 540

Query: 510  FFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP 569
            FFGSSQLSQFMDQ NPLSEITHKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETP
Sbjct: 541  FFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETP 600

Query: 570  EGPNIGLINSLAAYARTNQYGFLESPYRVVKEGVVSDDIVFLSAIEEADHVIAQASAAMN 629
            EGPNIGLINSLA +AR NQYGF+ESPYR V EG V+D++ ++SA+EE  +VIAQA+AA+ 
Sbjct: 601  EGPNIGLINSLATFARVNQYGFIESPYRKVVEGTVTDEVTYMSAMEEGKYVIAQANAALT 660

Query: 630  DKKQLIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSN 689
            +     D+L++ R  ++F +  P+D+  +DVSPKQ+VSVAA+LIPFLE+DDANRALMGSN
Sbjct: 661  EDGHFADDLISCRKASDFEMVQPQDIDYIDVSPKQLVSVAAALIPFLENDDANRALMGSN 720

Query: 690  MQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVADDEVETG 749
            MQRQAVP ++A+ P VGTGME  VARDSG  + A+R GV+  VDA+RIV+R  +D ++  
Sbjct: 721  MQRQAVPLVKAEAPYVGTGMEAAVARDSGATIAAKRAGVVQQVDATRIVIRATED-LKIA 779

Query: 750  EAGVDIYNLTKYTRSNQNTCINQRPLVSKGDKVQRGDIMADGPSTDMGELALGQNMRIAF 809
            E+GVDIY L K+ RSNQ+TCINQRPLV  GD V RG+I+ADGP T+MGELALG+N+ +AF
Sbjct: 780  ESGVDIYRLQKFQRSNQSTCINQRPLVKVGDLVGRGEILADGPLTEMGELALGRNVLVAF 839

Query: 810  MAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNK 869
            M WNG+NFEDSI +SER+V +D FT+IHI+E   +ARDTKLG EEIT DIPNVGE AL  
Sbjct: 840  MPWNGYNFEDSILISERIVSDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKN 899

Query: 870  LDEAGIVYVGAEVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGT 929
            LDEAGIVY+GAEV AGDILVGKVTPKGE+ +TPEEKLLRAIFGEKASDV+DTSLR+P G 
Sbjct: 900  LDEAGIVYIGAEVQAGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRIPPGV 959

Query: 930  KGTVIDVQVFTRDGVERDSRALAIEKMQLDEIRKDLNEEFRIVEGATFERLRSALNGQ-V 988
             GTV++V+VF R GVE+D RALAIE+ +++ + KD ++E  I+EG+   RL+  L GQ V
Sbjct: 960  TGTVVEVRVFNRRGVEKDERALAIERQEIESLAKDRDDERAILEGSFARRLKELLIGQKV 1019

Query: 989  VDGGAGLKKGTVITDEVLDGLEHGQWFKLRMAEDALNEQLEKAQQYIVDRRRLLDDKFED 1048
            V G  G+  G VI++++L G    QW ++ +  D    ++E  ++   +    + ++FE+
Sbjct: 1020 VGGPRGMATGGVISEDLLSGYTAAQWRQIAVENDETATEIEGLKKAYEESIAKIQERFEN 1079

Query: 1049 KKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANG 1108
            K  KLQ+GD+L PGVLK+VKV++A++R++QPGDKMAGRHGNKGV+S I P+EDMP+  +G
Sbjct: 1080 KVEKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLEDG 1139

Query: 1109 TPVDVVLNPLGVPSRMNVGQILETHLGLAAKGLGEKIDRMLEEQRKAA----ELRVFLTE 1164
            T VD+VLNPLGVPSRMNVGQILETHLG A +GLG +I  +LE+ ++      +LR  L +
Sbjct: 1140 TYVDIVLNPLGVPSRMNVGQILETHLGWACRGLGAQIGALLEQVKRGLIPINDLREKLDD 1199

Query: 1165 VYNEIGGRQENLDEFTDEEILALANNLKKGVPMATPVFDGAKEREIKAMLKLADLPESGQ 1224
            VY     + E+L    D++I  LA NL+ GVP+ATPVFDGA+E +I  ML+ A L  SGQ
Sbjct: 1200 VYGPRHAK-EDLAPMGDDQIKELAFNLRSGVPIATPVFDGARESDIVDMLRKAGLDSSGQ 1258

Query: 1225 MVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1284
            + L DGRTG  F+R VTVGY+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQFGGQR
Sbjct: 1259 VTLSDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQR 1318

Query: 1285 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKE 1344
            FGEMEVWALEAYGAAYTLQEMLTVKSDDV+GRTK+Y+ IV GD   E G+PESFNVL+KE
Sbjct: 1319 FGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVKGDDTFEAGIPESFNVLVKE 1378

Query: 1345 IRSLGIDIDL 1354
            +RSLG+D++L
Sbjct: 1379 MRSLGLDVEL 1388