Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440

Subject, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

 Score = 83.2 bits (204), Expect = 5e-20
 Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 36/255 (14%)

Query: 358 IDTTSNQLEALVEIYRMMRPGEPPTKDA--AETLFNNLFFSAERYDLSAVGRMKFNRRIG 415
           I+TT + LE    I + + PG+P       AET+  N       Y L  +G         
Sbjct: 263 INTTEDALE---HIGKRVAPGQPKEYKLKRAETILCN-------YLLPHMG--------- 303

Query: 416 RTEIEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVR 475
             E E  G   K  +  + K  +++  G  + DD DH  N+R++  G++ E+ FR    +
Sbjct: 304 -VESEKLGAKCKY-LGRMAKNSIELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQ 361

Query: 476 VERAVKERLSMAESEGLMP--QDLINAKPVAAAVKEFF-------GSSQLSQFMDQNNPL 526
           + + +K +L         P  Q  + +  +   ++          G + +SQ +D+ + L
Sbjct: 362 LIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYL 421

Query: 527 SEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYART 586
           + ++  RRV +     L+R +  FE RD+H T +G++CP ETPEGPN GL+ +LA   + 
Sbjct: 422 ATVSQLRRVVS----PLSRSQPHFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKV 477

Query: 587 NQYGFLESPYRVVKE 601
                 +S   ++KE
Sbjct: 478 TTDEGDDSVIELLKE 492



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 34/163 (20%), Positives = 67/163 (41%), Gaps = 35/163 (21%)

Query: 88  ECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKDIKEQEVYMGEIPLMTEN---------- 137
           E  +R + ++ PL +++   + + E      K +   EVY+GE+P+M  +          
Sbjct: 78  EARIRNLAYSAPLYLEMIPTVGEGEEE----KVLSPVEVYIGELPVMLGSEICHLCGKSA 133

Query: 138 --------------GTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPY 183
                         G F++NG+E+ +V+Q    P         K   + K++  A++   
Sbjct: 134 EELIKYGEDTQDPLGYFIVNGSEKAVVAQEDLIPNRIICE---KVEKNNKVVDIAKVFST 190

Query: 184 RGSW---LDFEFDPKDCVFVRI-DRRRKLPASVLLRALGYSTE 222
           R  +      E +P   + V        +P  +L+RALG  ++
Sbjct: 191 RHGFRALCTVERNPDGLLNVSFPGMPSTIPLVILMRALGAESD 233