Pairwise Alignments

Query, 177 a.a., transcription antipausing factor NusG from Pseudomonas putida KT2440

Subject, 177 a.a., NusG antitermination factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  174 bits (442), Expect = 6e-49
 Identities = 89/176 (50%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 1   MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKF 60
           MAKRWY V   S +EK +   +   V  AG+ED   E+LVPTEEV+E+R G+K  +ER+F
Sbjct: 1   MAKRWYSVSVLSNFEKKIAEQIKHAVAEAGLEDDIEEVLVPTEEVIEVRRGKKVTAERRF 60

Query: 61  FPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKP 120
            PGYVLV+MEM +  +HL+    RV GF+ G   +P  + D E   IL RV +G + P+ 
Sbjct: 61  MPGYVLVRMEMTDQGYHLINSINRVTGFL-GPQGRPMAMRDDEVNQILNRVEEGQEAPRS 119

Query: 121 KTLFEPGEVVRVIDGPFADFNGSVEEVNYEKSRLQVAVLIFGRSTPVELEFSQVEK 176
              F+ GE V V DGPF  F+GSVEEV+ + +RL+V V IFGR+TPVELEF+QV K
Sbjct: 120 LITFDIGEQVNVTDGPFEGFSGSVEEVDDDNNRLKVTVSIFGRATPVELEFTQVTK 175