Pairwise Alignments

Query, 344 a.a., Polyamine ABC transporter, periplasmic polyamine-binding protein from Pseudomonas putida KT2440

Subject, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 80.1 bits (196), Expect = 8e-20
 Identities = 83/339 (24%), Positives = 146/339 (43%), Gaps = 25/339 (7%)

Query: 1   MRKQLKLTALALGLFTAGQAMAADLTVISFGGANKAAQVKAFYEPWEKAGNGKIVAGEYN 60
           M+ +L  +AL         AMA D  +  +  +          E + K    K++   Y 
Sbjct: 1   MKNKLFASALCAAALFTTNAMAKDQELYFYNWSEYIPS--EVLEDFTKETGIKVIYSTYE 58

Query: 61  GEMAKVKAMVDTKSVSWNLVEVESPELARGCDEGMFEELDPALFGNEADYVPGAI-QPCG 119
              + + A + T+   ++LV   +  +++   EGM +E+D +   +  D  P  + +P  
Sbjct: 59  SNES-MYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNKPFD 117

Query: 120 VGF-----FVW-STVMAYNADKL-KTAPTSWADFWDTKQFPGKRGLRKGAKYTMEFALMA 172
            G      ++W +T +  N D L K +  +W D WD K + G+  L   A+     AL  
Sbjct: 118 PGNKFSIPYIWGATGIGINTDMLDKKSLKNWGDLWDAK-WAGQLMLMDDAREVFHIALSK 176

Query: 173 DGVAPKDVYKVLATKEGQDRAFKKLDELKPSIQWWEAGAQPPQFLASGDVVMSSAYNGRI 232
            G +P          +    A+++L +L P++  + +      +LA G+V +   +NG  
Sbjct: 177 LGYSPNTT-----NPKEIKAAYRELKKLMPNVLVFNSDFPANPYLA-GEVSLGMLWNGSA 230

Query: 233 AAVQKE-SNLKVVW--NGGIYDFDAWAIPKGAKNVEEAKKFIAYSVKPEQQKIYSENIAY 289
              ++E + ++++W   G I+  D+ +IP GAKN+E A K I + ++PE     +  I Y
Sbjct: 231 YMARQEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGY 290

Query: 290 GPANSKAVSLLSDEVKKDMPTTPENIANQVQIDVAFWAD 328
                 A  LL  E   D    P     Q  ID   W D
Sbjct: 291 PTPVKTAHDLLPKEFAND----PSIYPPQSVIDNGEWQD 325